ConDivSimComm: Null models for (TODO: better title)
In funphylocom: Functional traits, phylogenies, communities, simulations

Description Usage Arguments Details Value

Check for a given community how the mean pairwise distance changes with the parameter a in FPDist

1 2	ConDivSimComm(comm, PDist, FDist, Sim, p = 2, Plot = TRUE, ord = TRUE, disp99 = FALSE, num.a = 20)

`comm`	A vector over the species in the regional pool, giving the presence or absence of the species occurring in the community (1 for present species, 0 for absent species).
`PDist`	Phylogenetic distance matrix over the species in the regional pool.
`FDist`	Functional distance matrix over the species in the regional pool.
`Sim`	The number of permutations of the presence vector used to make the estimations.
`p`	Parameter passed to `FPDist` function.
`Plot`	TRUE or FALSE to make the plot of the expected average mean pairwise distance over a range of a-values (`a` is a parameter in the `FPDist` function), and the 5-95% confidence interval.
`ord`	Order rows and columns of the matrices? (defaults to `TRUE`). Note that sites are never ordered.
`disp99`	Display the 99% interval?
`num.a`	Number of a-values to compute.

If plot == TRUE, then a surface is drawn giving the null distribution. Lighter shades of gray give larger intervals with categories: 0.005-0.995 = 99%, 0.025-0.975 = 95%, 0.05-0.95 = 90%, 0.25-0.75 = 50%.

TODO

funphylocom documentation built on May 2, 2019, 5 p.m.