comm.traitgram: Community traitgram

In funphylocom: Functional traits, phylogenies, communities, simulations

Description

Displays a subset of species from a species pool within an Ackerly traitgram (traitgram).

Usage

comm.traitgram(x, phy, xaxt = "s", underscore = FALSE, show.names = TRUE,
  show.xaxis.values = TRUE, method = c("ace", "pic"),
  edge.color = c("black", "light grey"), edge.lwd.in = 2,
  edge.lwd.out = 1, tip.color = c("black", "light grey"),
  tip.cex = par("cex"), Group = NULL, ...)

Arguments

x	See traitgram.
phy	See traitgram.
xaxt	See traitgram.
underscore	See traitgram.
show.names	See traitgram.
show.xaxis.values	See traitgram.
method	See traitgram.
edge.color	A single color or a vector of two colors.
edge.lwd.in	A single width value for species in the subset.
edge.lwd.out	A single width value for species out of the subset (ignored if is.null(Group)).
tip.color	A single color or a vector of two colors.
tip.cex	A single size value.
Group	Either a subset of the tip labels in phy or the indices associated with the species in the community.
...	Additional arguments to traitgram.

Details

This function is a modification of the traitgram function in the picante package.

Value

No return value, but a traitgram is plotted.

Author(s)

David Ackerly, modified by Cecile Albert.

funphylocom documentation built on May 2, 2019, 5 p.m.