comm.traitgram: Community traitgram

Description Usage Arguments Details Value Author(s)

Description

Displays a subset of species from a species pool within an Ackerly traitgram (traitgram).

Usage

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comm.traitgram(x, phy, xaxt = "s", underscore = FALSE, show.names = TRUE,
  show.xaxis.values = TRUE, method = c("ace", "pic"),
  edge.color = c("black", "light grey"), edge.lwd.in = 2,
  edge.lwd.out = 1, tip.color = c("black", "light grey"),
  tip.cex = par("cex"), Group = NULL, ...)

Arguments

x

See traitgram.

phy

See traitgram.

xaxt

See traitgram.

underscore

See traitgram.

show.names

See traitgram.

show.xaxis.values

See traitgram.

method

See traitgram.

edge.color

A single color or a vector of two colors.

edge.lwd.in

A single width value for species in the subset.

edge.lwd.out

A single width value for species out of the subset (ignored if is.null(Group)).

tip.color

A single color or a vector of two colors.

tip.cex

A single size value.

Group

Either a subset of the tip labels in phy or the indices associated with the species in the community.

...

Additional arguments to traitgram.

Details

This function is a modification of the traitgram function in the picante package.

Value

No return value, but a traitgram is plotted.

Author(s)

David Ackerly, modified by Cecile Albert.


funphylocom documentation built on May 2, 2019, 5 p.m.