ggene: Semivariogram and Exploratory Spatial Analysis of Genetic Data

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Semivariogram and spatial analysis of genetic data: semi-variance computation, model fitting, analysis of anisotropy.

Author
Jean-Pierre Rossi
Date of publication
2016-06-08 09:39:11
Maintainer
Jean-Pierre Rossi <ggene.package@gmail.com>
License
GPL (>= 2)
Version
1.0.2

View on R-Forge

Man pages

aniso
A simulated haploid genotypic data set exhibiting zonal...
crypho
A haploid microsatellite dataset for the chestnut blight...
distlag
Compute custom distance lags
fitsvariog
Fit an exponential model to empirical variogram
gene2geo
Creates a 'ggene' object from a 'genind' object and a...
genocount
Identifies the different genotypes in a data set
genoweight
Compute a matrix of weights accounting for recurrent...
ggene-package
Semivariogram and exploratory spatial analysis of genetic...
larix1350
A dataset corresponding to the microsatellite data for a set...
larix2300
A dataset corresponding to the microsatellite data for a set...
randsvariog
Performs permutations and computes the variogram statistical...
sim01
A haploid genotypic data set simulated with the software...
sim02
A haploid genotypic dataset simulated with the software...
sim03
A haploid genotypic data set simulated with the software...
subsetdata
Extracts data subsets
svariog
Semivariogram computation
svarmap
Compute the variogram map for a genetic dataset
tab2geo
Create a 'ggene' object from data frames
varioWeight
Variogram computation with weighting for recurrent genotypes
Wagner
The example data set used in Wagner et al (2005)

Files in this package

ggene/DESCRIPTION
ggene/NAMESPACE
ggene/R
ggene/R/distlag.R
ggene/R/fitsvariog.R
ggene/R/gene2geo.R
ggene/R/genocount.R
ggene/R/genoweight.R
ggene/R/randsvariog.R
ggene/R/subsetdata.R
ggene/R/svariog.R
ggene/R/svarmap.R
ggene/R/tab2geo.R
ggene/R/varioWeight.R
ggene/R/zzz.r
ggene/build
ggene/build/vignette.rds
ggene/data
ggene/data/Wagner.rda
ggene/data/aniso.rda
ggene/data/crypho.rda
ggene/data/datalist
ggene/data/larix1350.rda
ggene/data/larix2300.rda
ggene/data/sim01.rda
ggene/data/sim02.rda
ggene/data/sim03.rda
ggene/inst
ggene/inst/doc
ggene/inst/doc/ggene_datasets.Rmd
ggene/inst/doc/ggene_datasets.pdf
ggene/inst/doc/ggene_introduction.Rmd
ggene/inst/doc/ggene_introduction.pdf
ggene/inst/extdata
ggene/inst/extdata/sim_01.csv
ggene/inst/extdata/sim_03.gen
ggene/inst/extdata/xysim_01.csv
ggene/man
ggene/man/Wagner.Rd
ggene/man/aniso.Rd
ggene/man/crypho.Rd
ggene/man/distlag.Rd
ggene/man/fitsvariog.Rd
ggene/man/gene2geo.Rd
ggene/man/genocount.Rd
ggene/man/genoweight.Rd
ggene/man/ggene-package.Rd
ggene/man/larix1350.Rd
ggene/man/larix2300.Rd
ggene/man/randsvariog.Rd
ggene/man/sim01.Rd
ggene/man/sim02.Rd
ggene/man/sim03.Rd
ggene/man/subsetdata.Rd
ggene/man/svariog.Rd
ggene/man/svarmap.Rd
ggene/man/tab2geo.Rd
ggene/man/varioWeight.Rd
ggene/vignettes
ggene/vignettes/fig
ggene/vignettes/fig/aniso.png
ggene/vignettes/fig/aniso2.png
ggene/vignettes/fig/sub01.png
ggene/vignettes/fig/sub02.png
ggene/vignettes/fig/vartheo.png
ggene/vignettes/ggene2.bib
ggene/vignettes/ggene_datasets.Rmd
ggene/vignettes/ggene_introduction.Rmd
ggene/vignettes/preamble.tex
ggene/vignettes/tmp-pdfcrop-11980.tex
ggene/vignettes/tmp-pdfcrop-6035.tex
ggene/vignettes/tmp-pdfcrop-7028.tex
ggene/vignettes/tmp-pdfcrop-9667.tex
ggene/vignettes/tmp-pdfcrop-9881.tex