glmmBUGS: Generalised Linear Mixed Models with BUGS and JAGS
Version 2.4.1

Automates running Generalised Linear Mixed Models, including spatial models, with WinBUGS, OpenBUGS and JAGS. Models are specified with formulas, with the package writings model files, arranging unbalanced data in ragged arrays, and creating starting values. The model is re-parameterised, and functions are provided for converting model outputs to the original parameterisation.

AuthorPatrick Brown, Lutong Zhou
Date of publication2016-09-23 00:24:47
MaintainerPatrick Brown <patrick.brown@utoronto.ca>
LicenseGPL
Version2.4.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("glmmBUGS", repos="http://R-Forge.R-project.org")

Popular man pages

addSpatial: Calculate adjacency values for WinBUGS
binToBinom: Convert Bernoulli observations to Binomial
getStartingValues: Extract starting values for an MCMC chain from glmmPQL...
glmmPQLstrings: An alternat interface to glmmPQL
mergeBugsData: Merge results from BUGS into a data.frame or SPDF
ontarioResult: Ontario Winbugs Results
winBugsRaggedArray: Ragged Arrays for multilevel models in BUGS
See all...

All man pages Function index File listing

Man pages

addSpatial: Calculate adjacency values for WinBUGS
binToBinom: Convert Bernoulli observations to Binomial
checkChain: Plot an MCMC run
cholInvArray: Precision matrices to variance matrices for Winbugs output
getDesignMatrix: Computes a design matrix from factors and interactions
getRaggedSeq: Get one sequence for a ragged array
getStartingValues: Extract starting values for an MCMC chain from glmmPQL...
glmmBUGS: A function to run Generalised Linear Mixed Models in Bugs
glmmPQLstrings: An alternat interface to glmmPQL
mergeBugsData: Merge results from BUGS into a data.frame or SPDF
muscleResult: data set contains muscle result
ontario: Ontario data on molar cancer
ontarioResult: Ontario Winbugs Results
popDataAdjMat: Data set containing an adjacency matrix
restoreParams: Reparametrise bugs output
rongelapUTM: Rongelap island data
startingFunction: Write a function to generate random MCMC starting values
summaryChain: Compute mean, standard deviation, and quantiles of an MCMC...
winBugsRaggedArray: Ragged Arrays for multilevel models in BUGS
writeBugsModel: Write a bugs model file for a Generalised Linear Mixed Model

Functions

addSpatial Man page
binToBinom Man page Source code
checkChain Man page Source code
cholInvArray Man page Source code
getBases Source code
getCovList Source code
getDesignMatrix Man page Source code
getRaggedSeq Man page
getStartingValues Man page
glmmBUGS Man page Source code
glmmPQLstrings Man page
mergeBugsData Man page
mergeBugsData,SpatialPolygonsDataFrame-method Man page
mergeBugsData,data.frame-method Man page
mergeBugsData-methods Man page
muscleResult Man page
ontario Man page
ontarioResult Man page
plotOne Source code
popDataAdjMat Man page
restoreParams Man page
rongelapResult Man page
rongelapUTM Man page
spatialBugs Source code
spatialBugs.SpatialPoints Source code
spatialBugs.SpatialPolygons Source code
spatialBugs.complex Source code
spatialBugs.data.frame Source code
spatialBugs.list Source code
spatialBugs.matrix Source code
spatialBugs.nb Source code
startingFunction Man page
summaryChain Man page Source code
winBugsRaggedArray Man page
writeBugsModel Man page

Files

DESCRIPTION
NAMESPACE
R
R/addSpatial.R
R/binToBinom.R
R/checkChain.R
R/cholInvArray.R
R/getDesignMatrix.R
R/getRaggedSeq.R
R/getStartingValues.R
R/glmmBUGS.R
R/glmmPQLstrings.R
R/mergeBugsData.R
R/restoreParams.R
R/startingFunction.R
R/summaryChain.R
R/winBugsRaggedArray.R
R/writeBugsModel.R
data
data/muscleResult.RData
data/ontario.RData
data/ontarioResult.RData
data/popDataAdjMat.RData
data/rongelapResult.RData
data/rongelapUTM.RData
inst
inst/CITATION
man
man/addSpatial.Rd
man/binToBinom.Rd
man/checkChain.Rd
man/cholInvArray.Rd
man/getDesignMatrix.Rd
man/getRaggedSeq.Rd
man/getStartingValues.Rd
man/glmmBUGS.Rd
man/glmmPQLstrings.Rd
man/mergeBugsData.Rd
man/muscleResult.Rd
man/ontario.Rd
man/ontarioResult.Rd
man/popDataAdjMat.Rd
man/restoreParams.Rd
man/rongelapUTM.Rd
man/startingFunction.Rd
man/summaryChain.Rd
man/winBugsRaggedArray.Rd
man/writeBugsModel.Rd
vignettes
vignettes/Makefile
vignettes/jags.Rnw
vignettes/openbugs.Rnw
glmmBUGS documentation built on May 21, 2017, 3:34 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.