mandel.kh: Calculate Mandel's h and k statistics for replicate...

In metRology: Support for Metrological Applications

Description

mandel.kh calculates Mandel's h and k statistics for replicate observations. These are traditionally used to provide a rapid graphical summary of results from an inter-laboratory exercise in which each organisation provides replicate observations of one or more measurands on one or more test items. Mandel's h is an indication of relative deviation from the mean value; Mandel's k is an indicator of precision compared to the pooled standard deviation across all groups.

Usage

	mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

	## Default S3 method:
mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

	## S3 method for class 'data.frame'
mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

	## S3 method for class 'matrix'
mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

	## S3 method for class 'array'
mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

	## S3 method for class 'ilab'
mandel.kh(x, g = NULL, m = NULL, na.rm = T, rowname = NULL, 
			type = c("h", "k"), method=c("classical", "robust"), n = NA, ...)

Arguments

x	An R object (see Details below), which contains replicate observations or, if g is absent, means or standard deviations.
g	A primary grouping factor, usually corresponding to Laboratory in an inter-laboratory study. If not present, x is taken as a set of means or standard deviations (depending on whether type is "h" or "k".
m	A secondary grouping factor, usually corresponding to test item or measured quantity. m is ignored if x has more than one column.
na.rm	A logical value indicating whether 'NA' values should be stripped before the computation proceeds. Passed to functions such as mean and sd.
rowname	A single character label for the primary grouping factor (e.g. "Lab", "Organisation").
type	Character denoting the statistic to be calculated; may be "h" or "k".
method	Character scalar giving the calculation method. "classical" gives the traditional calculation; "robust" gives a robust variant (see Details).
n	scalar number of observations per group. Required only if x consists of calculated standard deviations.
...	Additional parameters passed to hubers when method="robust" and type="h".

Details

mandel.kh can be called directly, but is usually intended to be called via convenience functions mandel.h or mandel.k.

mandel.kh is a generic, with methods for numeric vectors, arrays, data frames, matrices and objects of class 'ilab'.

Mandel's statistics are simple indicators of relative deviation or precision for grouped sets of observations. Given a set of observations x[i,j,l] where i, j, l denotes observation l, l=1, 2, ... n for measurand or test item j and group (usually laboratory) i, i=1, 2, ... p, Mandel's h and k are given by:

h=\frac{\bar{x_{ij}}-\bar{x_j}}{s_j}

where s_j=√{∑_{i=1}^p{\frac{(\bar{x_{ij}}-\bar{x_j})}{p-1}}}

and

k=√{\frac{s_{ij}^2}{∑_{i=1}^p{s_{ij}^2/p}}}

where s_{ij} is the standard deviation of values x_{ijk} over k=1, 2, ..., n.

If x is a vector, one-dimensional array or single-column matrix, values are aggregated by g and, if present, by m. If x is a data frame or matrix, each column is aggregated by g and m silently ignored if present. In all cases, if g is NULL or missing, each row (or value, if a vector) in x is taken as a pre-calculated mean (for Mandel's h) or standard deviation (for Mandel's k).

If x is an object of class 'ilab', g defaults to '$org' and m to $measurand.

The returned object includes a label ('grouped.by') for the primary grouping factor. For the 'ilab' method, this is "Organisation". For other methods, If rowname is non-null, rowname is used. If rowname is NULL, the default is deparse(substitute(g)); if g is also NULL or missing, "Row" is used.

If method="robust", Mandel's h is replaced by a robust z score calculated by replacing \bar{x_j} and s_j with the robust estimates of location and scale obtained using Huber's estimate with tuning constant k set to 1.5 (or as included in ...), and Mandel's k is calculated by replacing the classical pooled standard deviation in the denominator with the robust pooled standard deviation calculated by algorithm S (see algS).

Value

mandel.kh returns an object of class "mandel.kh", which is a data frame consisting of the required Mandel's statistics and in which each row corresponds to a level of g and each column to a level of m or (if x was a matrix or data frame) to the corresponding column in x. In addition to the class, the object has attributes:

'mandel.type'

"h" or "k"

'grouped.by'

Character scalar giving the label used for the grouping factor g; see Details above for the defaults.

'n'

Number of observations per group (n if specified

Author(s)

S Ellison [e-mail]

References

Accuracy (trueness and precision) of measurement methods and results – Part 2: Basic method for the determination of repeatability and reproducibility of a standard measurement method. ISO, Geneva (1994).

See Also

mandel.h, mandel.k for convenience functions; pmandelh, pmandelk for probabilities, quantiles etc.; plot.mandel.kh, barplot.mandel.kh for plotting methods. algS and hubers for robust estimates used when method="robust".

Examples

	data(RMstudy)

	#Data frame examples: note no secondary grouping factor
	h <- with(RMstudy, mandel.kh(RMstudy[2:9], g=Lab, type="h"))
	plot(h, las=2)

	k <- with(RMstudy, mandel.kh(RMstudy[2:9], g=Lab, type="k"))
	plot(k, las=2)

	#Vector variant
	RMstk <- stack(RMstudy[,2:9])
	names(RMstk) <- c("x", "meas")
		#names replace 'values' and 'ind'
	RMstk$Lab <- rep(RMstudy$Lab, 8)
	h2 <- with(RMstk, mandel.kh(x, g=Lab, m=meas, rowname="Laboratory"))
		#Note use of rowname to override g
	plot(h2, las=2)
	
	#ilab method
	RM.ilab <- with(RMstk, construct.ilab(org=Lab, x=x, measurand=meas, 
		item=factor(rep("CRM", nrow(RMstk))) ) )

	plot(mandel.kh(RM.ilab, type="h"))
	
	#Robust variants
	hrob <- with(RMstudy, mandel.kh(RMstudy[2:9], g=Lab, type="h", method="robust"))
	plot(hrob, las=2)
	
	krob <- with(RMstudy, mandel.kh(RMstudy[2:9], g=Lab, type="k", method="robust"))
	plot(krob, las=2)

Example output

Attaching package: 'metRology'

The following objects are masked from 'package:base':

    cbind, rbind

metRology documentation built on Sept. 22, 2020, 3 a.m.