adjpval: Simulated adjusted p-values

In metaRNASeq: Meta-Analysis of RNA-Seq Data

Description

The adjusted p-values provided here result from the following procedure: 1) simulation of two RNA-seq experiments with four replicates in each condition via the sim.function, 2) analysis of differentially expressed tags using the DESeq package.

Usage

data(adjpval)

Format

List of length 2, where each list is a vector containing the adjusted p-values for 14,456 genes from individual differential analyses (obtained using DESeq v1.8.3) of each of the simulated RNA-seq datasets.

Details

It is possible to reproduce these adjusted p-values using the procedure described in the package vignette.

References

A. Rau, G. Marot and F. Jaffrezic (2014). Differential meta-analysis of RNA-seq data. BMC Bioinformatics 15:91

Examples

data(adjpval)
## Maybe str(adjpval)

metaRNASeq documentation built on Sept. 30, 2021, 3 p.m.