The p-values provided here result from the following procedure:
1) simulation of two RNA-seq experiments with four replicates in each condition via the
sim.function, 2) analysis of differentially expressed tags using the DESeq package.
List of length 2, where each list is a vector containing the raw p-values for 14,456 genes from individual differential analyses (obtained using DESeq v1.8.3) of each of the simulated RNA-seq datasets.
It is possible to reproduce these p-values using the procedure described in the package vignette.
A. Rau, G. Marot and F. Jaffrezic (2014). Differential meta-analysis of RNA-seq data. BMC Bioinformatics 15:91