opm: Analysing Phenotype Microarray and Growth Curve Data

Tools for analysing OmniLog(R) and MicroStation(TM) phenotype microarray (PM) data as produced by the devices distributed by BIOLOG Inc. as well as similar kinds of data such as growth curves. Major facilities are plotting data, accurately estimating curve parameters, comparing and discretising data, creating phylogenetic formats and reports for taxonomic journals, drawing the PM analysis results in biochemical pathway graphs optionally including genome annotations, running multiple comparisons of means, easy interaction with powerful feature-selection approaches, integrating metadata, using the YAML format for the storage of data and metadata, batch conversion of large numbers of files, and database I/O.

Package details

AuthorMarkus Goeker, with contributions by Benjamin Hofner, Lea A.I. Vaas, Johannes Sikorski, Maria del Carmen Montero Calasanz, Jan P. Meier-Kolthoff, Nora Buddruhs and Anne Fiebig
MaintainerMarkus Goeker <[email protected]>
LicenseGPL (>= 2)
URL http://opm.dsmz.de/
Package repositoryView on R-Forge
Installation Install the latest version of this package by entering the following in R:
install.packages("opm", repos="http://R-Forge.R-project.org")

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opm documentation built on Oct. 23, 2018, 3 p.m.