aggregated | Get aggregated data |
annotated | Create vector or matrix with substrate annotation |
as.data.frame | Create data frame |
batch_opm | Batch-convert PM data |
boccuto_et_al | Autism cell-line example data set |
bracket | Select subset |
bracket.set | Assign subset |
c | Combination and addition of plates |
ci_plot | Plot point estimates with CIs |
collect_template | Input metadata |
csv_data | Information from input CSV file |
dim | Get dimensions |
discrete | Discretisation functions |
discretized | Get discretised data |
do_aggr | Aggregate kinetics using curve-parameter estimation |
do_disc | Discretise curve parameters |
duplicated | Determine duplicated plates |
explode_dir | Helper functions for file input and output |
extract | Extract aggregated values and/or metadata |
find_substrate | Identify substrates or positions |
has_aggr | Are aggregated or discretised data present? |
heat_map | Heat map |
html_args | HTML formatting and output label generation |
include_metadata | Add or map metadata or edit them by hand |
infix.k | Query metadata keys |
infix.q | Query metadata |
kmeans | Work with k-means results |
level_plot | Level plot |
max | Overall or minimal maximum |
measurements | Stored measurements |
merge | Merge or split plates |
metadata | Get metadata |
metadata.set | Replace metadata |
OPM | Real classes of the 'opm' package |
OPM_DB | Classes for 'opm' database I/O |
opm_dbput | Database I/O for 'opm' |
opm_files | Files and colour sets used by the package |
opm_mcp | Multiple comparison of group means |
opm_opt | Global 'opm' options |
opm.package | The 'opm' package |
opms.function | OPMS constructor |
opmx.function | Convert user-defined objects to OPMX |
parallel_plot | Parallel plot |
phylo_data | Export phylogenetic data |
plates | Get available plates or apply function to them |
plate_type | Plate type displayed or modified, registered or deleted |
potato | Potato cell-line growth data set |
radial_plot | Radial plot |
read_opm | Read multiple PM files at once or read single PM file |
run_kmeans | Conduct k-means partitioning |
separate | Regularly split character vectors if possible |
set_spline_options | Spline options |
sort | Sort, unify, revert or repeat OPMS objects |
subset | Select a subset of the plates (or time points) |
substrate_info | Provide information on substrates |
summary | Summarise OPMX or MOPMX objects |
to_yaml | Convert to YAML |
vaas_4 | Example data sets from Vaas et al. (2012) |
wells | Listing of well names |
WMD | Virtual classes of the 'opm' package |
xy_plot | X-Y plot |
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