Man pages for opm
Analysing Phenotype Microarray and Growth Curve Data
| aggregated | Get aggregated data |
| annotated | Create vector or matrix with substrate annotation |
| as.data.frame | Create data frame |
| batch_opm | Batch-convert PM data |
| boccuto_et_al | Autism cell-line example data set |
| bracket | Select subset |
| bracket.set | Assign subset |
| c | Combination and addition of plates |
| ci_plot | Plot point estimates with CIs |
| collect_template | Input metadata |
| csv_data | Information from input CSV file |
| dim | Get dimensions |
| discrete | Discretisation functions |
| discretized | Get discretised data |
| do_aggr | Aggregate kinetics using curve-parameter estimation |
| do_disc | Discretise curve parameters |
| duplicated | Determine duplicated plates |
| explode_dir | Helper functions for file input and output |
| extract | Extract aggregated values and/or metadata |
| find_substrate | Identify substrates or positions |
| has_aggr | Are aggregated or discretised data present? |
| heat_map | Heat map |
| html_args | HTML formatting and output label generation |
| include_metadata | Add or map metadata or edit them by hand |
| infix.k | Query metadata keys |
| infix.q | Query metadata |
| kmeans | Work with k-means results |
| level_plot | Level plot |
| max | Overall or minimal maximum |
| measurements | Stored measurements |
| merge | Merge or split plates |
| metadata | Get metadata |
| metadata.set | Replace metadata |
| OPM | Real classes of the 'opm' package |
| OPM_DB | Classes for 'opm' database I/O |
| opm_dbput | Database I/O for 'opm' |
| opm_files | Files and colour sets used by the package |
| opm_mcp | Multiple comparison of group means |
| opm_opt | Global 'opm' options |
| opm.package | The 'opm' package |
| opms.function | OPMS constructor |
| opmx.function | Convert user-defined objects to OPMX |
| parallel_plot | Parallel plot |
| phylo_data | Export phylogenetic data |
| plates | Get available plates or apply function to them |
| plate_type | Plate type displayed or modified, registered or deleted |
| potato | Potato cell-line growth data set |
| radial_plot | Radial plot |
| read_opm | Read multiple PM files at once or read single PM file |
| run_kmeans | Conduct k-means partitioning |
| separate | Regularly split character vectors if possible |
| set_spline_options | Spline options |
| sort | Sort, unify, revert or repeat OPMS objects |
| subset | Select a subset of the plates (or time points) |
| substrate_info | Provide information on substrates |
| summary | Summarise OPMX or MOPMX objects |
| to_yaml | Convert to YAML |
| vaas_4 | Example data sets from Vaas et al. (2012) |
| wells | Listing of well names |
| WMD | Virtual classes of the 'opm' package |
| xy_plot | X-Y plot |
