patchworkCG: Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data

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Visualizes CompleteGenomics Whole genome data

Author
Markus Rasmussen, Sebastian DiLorenzo
Date of publication
2013-06-05 12:18:30
Maintainer
Markus Rasmussen <Markus.Mayrhofer@medsci.uu.se>
License
GPL-2
Version
2.0

View on R-Forge

Man pages

CG_KaCh
Karyotype plotting of each chromosome
CG_KaChCN
Karyotype plotting for each chromosome post...
CG_Ka_check
Karyotype check function
CG_karyotype
CompleteGenomics karyotype plotting function
ideogram
Ideogram data for the chromosomes.
patchwork.CG.copynumbers
Function plot allele-specific copy numbers of the genome
patchwork.CG.plot
The main function of patchworkCG.
subfunctions_copynumbers
A number of subfunctions used within...
zzz
Welcome to patchworkCG

Files in this package

patchworkCG/DESCRIPTION
patchworkCG/NAMESPACE
patchworkCG/R
patchworkCG/R/CG_KaCh.r
patchworkCG/R/CG_KaChCN.r
patchworkCG/R/CG_Ka_check.r
patchworkCG/R/CG_karyotype.r
patchworkCG/R/patchwork.CG.copynumbers.r
patchworkCG/R/patchwork.CG.plot.r
patchworkCG/R/subfunctions_copynumbers.r
patchworkCG/R/zzz.R
patchworkCG/data
patchworkCG/data/ideogram.RData
patchworkCG/example_plots
patchworkCG/example_plots/HCC2218__KaChCN_chr1.png
patchworkCG/example_plots/HCC2218__KaCh_chr1.png
patchworkCG/example_plots/HCC2218__Ka_check.png
patchworkCG/example_plots/README
patchworkCG/man
patchworkCG/man/CG_KaCh.Rd
patchworkCG/man/CG_KaChCN.Rd
patchworkCG/man/CG_Ka_check.Rd
patchworkCG/man/CG_karyotype.Rd
patchworkCG/man/ideogram.Rd
patchworkCG/man/patchwork.CG.copynumbers.Rd
patchworkCG/man/patchwork.CG.plot.Rd
patchworkCG/man/subfunctions_copynumbers.Rd
patchworkCG/man/zzz.Rd