Description Usage Arguments Details Author(s) See Also
Plots each, color coded by chromosomal coordinate, chromosome against a background of the complete genome.
1 |
chr |
Chromosomes name of segm object, as generated from somaticCnvSegmentsNonDiplod file. |
start |
Start position of segment. |
end |
End position of segment. |
int |
Ratio between relative coverage and segment length. |
ai |
Allelic imbalance. |
name |
Default is ”. Plot generated as "name_karyotype.png" in your working directory. |
xlim |
Default is c(0,2.4). Limit of x axis. |
ylim |
Default is c(0,1). Limit of y axis. |
Vertical axis: Allelic imbalance.
Horizontal axis: Total intensity.
The plot is a overview, for a closer look see the plots generated by CG_KaCh().
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se
Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
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