subfunctions_copynumbers: A number of subfunctions used within...

In patchworkCG: Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data

Description

A number of subfunctions used within patchwork.CG.copynumbers(). These functions are identical in patchwork package, so should that package be installed before patchworkCG or vice versa you will get a non-consequential message saying:

The following object(s) are masked from 'package:patchwork':

chrom_ucsc, deChrom_ucsc, is.autosome, weightedMean, weightedMedian

Usage

weightedMedian(data,weights)
weightedMean(data,weights)
is.autosome(vector)
deChrom_ucsc(data)
chrom_ucsc(data)

Arguments

data	Object to be handled by the internal function.
weights	Weights to be applied.
vector	The segm objects chr column.

Author(s)

Markus Mayrhofer, [e-mail]
Sebastian DiLorenzo, [e-mail]

See Also

patchwork.CG.copynumbers

patchworkCG documentation built on May 2, 2019, 6:47 p.m.