Files in phylobase
Base package for phylogenetic structures and comparative data

DESCRIPTION
NAMESPACE
NEWS
R
R/MRCA-methods.R R/RcppExports.R R/addData-methods.R R/ancestors.R R/checkdata.R R/edgeLength-methods.R R/extractTree.R R/formatData.R R/getNode-methods.R R/internal-constructors.R R/labels-methods.R R/multiphylo4-class.R R/nodeId-methods.R R/oldclasses-class.R R/pdata.R R/phylo4-accessors.R R/phylo4-class.R R/phylo4-methods.R R/phylo4d-accessors.R R/phylo4d-class.R R/phylo4d-methods.R R/phylobase-package.R R/phylobase.options.R R/phylomats-class.R R/print-methods.R R/readNCL.R R/reorder-methods.R R/root-methods.R R/setAs-methods.R R/shortestPath-methods.R R/subset-methods.R R/summary-methods.R R/tbind.R R/tdata-methods.R R/treePlot.R R/treestruc.R R/zzz.R
build
build/vignette.rds
data
data/geospiza.rda
data/geospiza_raw.rda
data/owls4.rda
inst
inst/doc
inst/doc/developer.Rnw
inst/doc/developer.pdf
inst/doc/phylobase.Rnw
inst/doc/phylobase.pdf
inst/nexusfiles
inst/nexusfiles/ExContData.Rdata
inst/nexusfiles/MultiLineTrees.nex
inst/nexusfiles/NastyLabels.nex
inst/nexusfiles/NastyLabels2.nex
inst/nexusfiles/badnex.nex
inst/nexusfiles/co1.nex
inst/nexusfiles/minNex.nex
inst/nexusfiles/minSeq.nex
inst/nexusfiles/multiLines.Rdata
inst/nexusfiles/newick.tre
inst/nexusfiles/noStateLabels.nex
inst/nexusfiles/shorebird_underscore.nex
inst/nexusfiles/treeRoundingError.nex
inst/nexusfiles/treeWithContinuousData.nex
inst/nexusfiles/treeWithDiscAndContData.nex
inst/nexusfiles/treeWithDiscreteData.nex
inst/nexusfiles/treeWithPolyExcludedData.nex
inst/nexusfiles/treeWithSpecialCharacters.nex
inst/nexusfiles/treeWithUnderscoreLabels.nex
man
man/MRCA.Rd man/addData-methods.Rd man/ancestors.Rd man/checkPhylo4.Rd man/edgeLength-methods.Rd man/edges-accessors.Rd man/extractTree.Rd man/formatData.Rd man/geospiza.Rd man/getNode-methods.Rd man/labels-methods.Rd man/multiPhylo-class.Rd man/nTips-methods.Rd man/nodeId-methods.Rd man/owls4.Rd man/pdata-class.Rd man/pdata.Rd man/phylo4-class.Rd man/phylo4-methods.Rd man/phylo4d-accessors.Rd man/phylo4d-class.Rd man/phylo4d-methods.Rd man/phyloXXYY.Rd man/phylobase-package.Rd man/phylobase.options.Rd man/phylobubbles.Rd man/phylomat-class.Rd man/plotOneTree.Rd man/print-methods.Rd man/readNexus.Rd man/reorder-methods.Rd man/root-methods.Rd man/setAs-methods.Rd man/shortestPath-methods.Rd man/subset-methods.Rd man/summary-methods.Rd man/tdata-methods.Rd man/tip.data.plot.Rd man/treePlot-methods.Rd man/treeStructure-methods.Rd
src
src/GetNCL.cpp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/ancestors.c
src/checkPhylo4.cpp
src/descendants.c
src/ncl
src/ncl/ncl.h
src/ncl/nxsallocatematrix.h
src/ncl/nxsassumptionsblock.h
src/ncl/nxsblock.h
src/ncl/nxscdiscretematrix.h
src/ncl/nxscharactersblock.h
src/ncl/nxscxxdiscretematrix.h
src/ncl/nxsdatablock.h
src/ncl/nxsdefs.h
src/ncl/nxsdiscretedatum.h
src/ncl/nxsdistancedatum.h
src/ncl/nxsdistancesblock.h
src/ncl/nxsemptyblock.h
src/ncl/nxsexception.h
src/ncl/nxsmultiformat.h
src/ncl/nxspublicblocks.h
src/ncl/nxsreader.h
src/ncl/nxssetreader.h
src/ncl/nxsstring.h
src/ncl/nxstaxablock.h
src/ncl/nxstoken.h
src/ncl/nxstreesblock.h
src/ncl/nxsunalignedblock.h
src/ncl/nxsutilcopy.h
src/nxsassumptionsblock.cpp
src/nxsblock.cpp
src/nxscharactersblock.cpp
src/nxscxxdiscretematrix.cpp
src/nxsdatablock.cpp
src/nxsdistancedatum.cpp
src/nxsdistancesblock.cpp
src/nxsemptyblock.cpp
src/nxsexception.cpp
src/nxsmultiformat.cpp
src/nxspublicblocks.cpp
src/nxsreader.cpp
src/nxssetreader.cpp
src/nxsstring.cpp
src/nxstaxablock.cpp
src/nxstoken.cpp
src/nxstreesblock.cpp
src/nxsunalignedblock.cpp
src/phyloXX.c
src/reorderBinary.c
src/reorderRobust.c
tests
tests/doRUnit.R tests/misctests.R
tests/misctests.Rout.save
tests/phylo4dtests.R
tests/phylo4dtests.Rout.save
tests/phylosubtest.R
tests/phylosubtest.Rout.save
tests/phylotorture.R
tests/phylotorture.Rout.save
tests/plottest.R
tests/plottest.Rout.save
tests/roundtrip.R
tests/roundtrip.Rout.save
tests/test-all.R tests/testprune.R
tests/testprune.Rout.save
tests/testthat
tests/testthat/test.badnex.R tests/testthat/test.checkdata.R tests/testthat/test.class-phylo4.R tests/testthat/test.class-phylo4d.R tests/testthat/test.formatData.R tests/testthat/test.methods-oldclasses.R tests/testthat/test.methods-phylo4.R tests/testthat/test.pdata.R tests/testthat/test.phylo4.R tests/testthat/test.phylobase.options.R tests/testthat/test.prune.R tests/testthat/test.readNCL.R tests/testthat/test.setAs-Methods.R tests/testthat/test.subset.R tests/testthat/test.tbind.R tests/testthat/test.treePlot.R tests/testthat/test.treestruc.R tests/testthat/test.treewalk.R
vignettes
vignettes/developer.Rnw
vignettes/phylobase.Rnw
phylobase documentation built on May 31, 2017, 5:03 a.m.