Files in phylobase

Base package for phylogenetic structures and comparative data

NEWS

DESCRIPTION

NAMESPACE

inst/doc/phylobase.pdf

inst/doc/developer.Rnw

inst/doc/phylobase.Rnw

inst/doc/developer.pdf

inst/nexusfiles/treeWithPolyExcludedData.nex

inst/nexusfiles/treeWithUnderscoreLabels.nex

inst/nexusfiles/treeWithSpecialCharacters.nex

inst/nexusfiles/treeRoundingError.nex

inst/nexusfiles/minNex.nex

inst/nexusfiles/treeWithContinuousData.nex

inst/nexusfiles/ExContData.Rdata

inst/nexusfiles/newick.tre

inst/nexusfiles/minSeq.nex

inst/nexusfiles/noStateLabels.nex

inst/nexusfiles/NastyLabels.nex

inst/nexusfiles/treeWithDiscAndContData.nex

inst/nexusfiles/badnex.nex

inst/nexusfiles/NastyLabels2.nex

inst/nexusfiles/co1.nex

inst/nexusfiles/shorebird_underscore.nex

inst/nexusfiles/MultiLineTrees.nex

inst/nexusfiles/multiLines.Rdata

inst/nexusfiles/treeWithDiscreteData.nex

vignettes/developer.Rnw

vignettes/phylobase.Rnw

R/internal-constructors.R R/nodeId-methods.R R/phylobase-package.R R/tdata-methods.R R/getNode-methods.R R/addData-methods.R R/treePlot.R R/reorder-methods.R R/zzz.R R/phylo4d-class.R R/shortestPath-methods.R R/edgeLength-methods.R R/phylo4d-methods.R R/phylo4-methods.R R/ancestors.R R/MRCA-methods.R R/tbind.R R/formatData.R R/print-methods.R R/RcppExports.R R/summary-methods.R R/multiphylo4-class.R R/readNCL.R R/treestruc.R R/setAs-methods.R R/phylomats-class.R R/checkdata.R R/phylo4-accessors.R R/labels-methods.R R/phylo4-class.R R/subset-methods.R R/phylo4d-accessors.R R/oldclasses-class.R R/phylobase.options.R R/extractTree.R R/root-methods.R R/pdata.R

src/nxspublicblocks.cpp

src/phyloXX.c

src/nxsdistancedatum.cpp

src/nxscxxdiscretematrix.cpp

src/nxstoken.cpp

src/nxsdistancesblock.cpp

src/nxsmultiformat.cpp

src/Makevars.win

src/reorderBinary.c

src/nxsunalignedblock.cpp

src/nxsblock.cpp

src/descendants.c

src/nxsstring.cpp

src/nxsreader.cpp

src/nxssetreader.cpp

src/RcppExports.cpp

src/nxstaxablock.cpp

src/ancestors.c

src/reorderRobust.c

src/checkPhylo4.cpp

src/nxsexception.cpp

src/nxsemptyblock.cpp

src/nxstreesblock.cpp

src/Makevars

src/nxscharactersblock.cpp

src/nxsdatablock.cpp

src/GetNCL.cpp

src/nxsassumptionsblock.cpp

src/ncl/nxsallocatematrix.h

src/ncl/nxsmultiformat.h

src/ncl/nxsstring.h

src/ncl/nxsdistancesblock.h

src/ncl/nxstreesblock.h

src/ncl/ncl.h

src/ncl/nxstaxablock.h

src/ncl/nxsblock.h

src/ncl/nxsdatablock.h

src/ncl/nxstoken.h

src/ncl/nxsdefs.h

src/ncl/nxsdiscretedatum.h

src/ncl/nxsunalignedblock.h

src/ncl/nxscharactersblock.h

src/ncl/nxsutilcopy.h

src/ncl/nxsdistancedatum.h

src/ncl/nxsemptyblock.h

src/ncl/nxspublicblocks.h

src/ncl/nxscxxdiscretematrix.h

src/ncl/nxsassumptionsblock.h

src/ncl/nxscdiscretematrix.h

src/ncl/nxssetreader.h

src/ncl/nxsexception.h

src/ncl/nxsreader.h

man/MRCA.Rd man/owls4.Rd man/labels-methods.Rd man/nodeId-methods.Rd man/geospiza.Rd man/phylobase.options.Rd man/multiPhylo-class.Rd man/tdata-methods.Rd man/phyloXXYY.Rd man/checkPhylo4.Rd man/extractTree.Rd man/phylo4-methods.Rd man/treeStructure-methods.Rd man/phylobase-package.Rd man/phylo4d-accessors.Rd man/readNexus.Rd man/edgeLength-methods.Rd man/treePlot-methods.Rd man/formatData.Rd man/root-methods.Rd man/phylomat-class.Rd man/print-methods.Rd man/getNode-methods.Rd man/tip.data.plot.Rd man/summary-methods.Rd man/edges-accessors.Rd man/phylobubbles.Rd man/plotOneTree.Rd man/pdata.Rd man/subset-methods.Rd man/phylo4d-class.Rd man/setAs-methods.Rd man/pdata-class.Rd man/phylo4d-methods.Rd man/reorder-methods.Rd man/shortestPath-methods.Rd man/phylo4-class.Rd man/addData-methods.Rd man/ancestors.Rd man/nTips-methods.Rd

build/vignette.rds

tests/roundtrip.Rout.save

tests/plottest.Rout.save

tests/doRUnit.R tests/phylo4dtests.R

tests/misctests.Rout.save

tests/testprune.Rout.save

tests/testprune.R

tests/phylotorture.Rout.save

tests/plottest.R tests/phylotorture.R tests/misctests.R

tests/phylo4dtests.Rout.save

tests/test-all.R

tests/phylosubtest.Rout.save

tests/phylosubtest.R tests/roundtrip.R tests/testthat/test.pdata.R tests/testthat/test.class-phylo4.R tests/testthat/test.methods-oldclasses.R tests/testthat/test.treewalk.R tests/testthat/test.prune.R tests/testthat/test.treestruc.R tests/testthat/test.methods-phylo4.R tests/testthat/test.setAs-Methods.R tests/testthat/test.formatData.R tests/testthat/test.treePlot.R tests/testthat/test.phylobase.options.R tests/testthat/test.checkdata.R tests/testthat/test.subset.R tests/testthat/test.phylo4.R tests/testthat/test.class-phylo4d.R tests/testthat/test.readNCL.R tests/testthat/test.badnex.R tests/testthat/test.tbind.R

data/geospiza.rda

data/owls4.rda

data/geospiza_raw.rda

phylobase documentation built on May 2, 2019, 6:49 p.m.