Description Usage Arguments Value Methods Author(s) See Also Examples
Methods to retrieve or update tip, node or all data associated with a phylogenetic tree stored as a phylo4d object
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | tdata(x, ...)
## S4 method for signature 'phylo4d'
tdata(x, type = c("all", "tip", "internal"),
label.type = c("row.names", "column"), empty.columns = TRUE)
tdata(x, ...) <- value
tipData(x, ...)
## S4 method for signature 'phylo4d'
tipData(x, ...)
tipData(x, ...) <- value
nodeData(x, ...)
## S4 method for signature 'phylo4d'
nodeData(x, ...)
nodeData(x, ...) <- value
|
x |
A |
type |
The type of data to retrieve or update: “ |
label.type |
How should the tip/node labels from the tree be returned?
“ |
empty.columns |
Should columns filled with |
... |
For the tipData and nodeData accessors, further
arguments to be used by |
value |
a data frame (or object to be coerced to one) to replace the
values associated with the nodes specified by the argument |
tdata
returns a data frame
signature(object="phylo4d")
: retrieve or update data
associated with a tree in a phylo4d
object
Ben Bolker, Thibaut Jombart, Francois Michonneau
1 2 3 4 |
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