phylo4d-class: phylo4d class

In phylobase: Base package for phylogenetic structures and comparative data

Description

S4 class for phylogenetic tree and data.

Objects from the Class

Objects can be created from various trees and a data.frame using the constructor phylo4d, or using new("phylo4d", ...{}) for empty objects.

Author(s)

Ben Bolker, Thibaut Jombart

See Also

coerce-methods for translation functions. The phylo4d constructor and the formatData function to check the validity of trees and data. See also the phylo4 constructor, the phylo4 class, and the checkPhylo4 function to check the validity of phylo4 trees.

Examples

example(read.tree, "ape")
  obj <- phylo4d(as(tree.owls.bis,"phylo4"), data.frame(wing=1:3))
  obj
  names(obj)
  summary(obj)

phylobase documentation built on May 2, 2019, 6:49 p.m.