Man pages for pi0
Estimating the proportion of true null hypotheses for FDR

agjackAveraged generalized jackknife estimate of pi0
CBUM(Censored) Beta-Uniform mixture for p-values
clean.cdfSaving, loading or removing pre-computed conditional cdf...
coef.ncpestExtract estimated parameters
combn2RRandomly Choosing R Combinations of Two Groups of n and n2...
cond.cdfconditional cdf of p-values given noncentrality parameters
convestEstimate Proportion of True Null Hypotheses
discTMixFit a discrete mixture of (noncentral) t-distributions
dncpDensity of noncentrality parameters
dt.int2INTerpolation of INTeger degrees of freedom noncentral...
dt.lapLaplace approximation to the noncentral t-density
dtn.mixDensity of noncental t-normal mixture
extrp.pi0.masterExtrapolate the Estimates of P-value Density at 1 from...
fdrFalse Discovery Rate (FDR) Estimation Based on a Given...
fitted.discTMixDensity evaluated at observed statistics for discTMix class
fitted.nparncpDensity evaluated at observed statistics for ncpest class
geomeanGeometric mean and harmonic mean functions
gjackGeneralized jackknife
grid.searchPerforms a grid search to minimize the objective function
histf1Histogram estimator of p-value density evaluated at 1
lastbinHistogram estimator of p-value density evaluated at 1
lfdrLocal False Discovery Rates (lfdr), i.e., Posterior...
loadOrInstallLoad packages or install and load packages
logLik.ncpestlog likelihood from an object of class ncpest
matrix.t.testApply a Two Sample T-test to Each Row or Column of a Matrix
mdtEstimated arginal density of t-statistics
mTruncNormMoments of truncated normal distribution and the integral in...
ncpestEstimation of the density of absolute noncentrality...
ncpest.iteriterative call to the nparncpp function
nparncpNonparametric estimation of noncentrality parameters
parncpParametric estimation of noncentrality parameter distribution
pavaf1pooling adjacent violator algorithm estimate of p-value...
pdf.distDistance between densities
pi0-internalinternal functions not to be used by users directly
pi0-packageEstimating the proportion of true null hypotheses and False...
plot.extrpi0Plotting the Estimated Regression Surface
plot.nparncpplot an object of class nparncpt, i.e., nonparametric...
plot.parncpplot an object of class parncpt, i.e., parametric estiamte of...
plot.sparncpplot an object of class sparncpt, i.e., semiparametric...
plot.subexPlotting the P-value, Q-values, and the Regression Surface
plot.subt3D Scatter Plot of Subsample Sizes and P-value Density at...
print.extrpi0Print the Summary of the Extrapolation
print.subexPrinting a Summary of Subsampling-Extrapolation Results
print.subtPrint the Summary of the Subsampling T-tests
pt.sadSaddle Point Approximation of noncentral t-distribution
reflectionReflection and folding of a function about zero
sim.datSimulating a Microarray Data Set
simulatedDatA Simulated Microarray Data Set
simulatedExtrpi0A Simulated 'extrpi0' Object
simulatedSubexA Simulated 'subex' Object
simulatedSubtA Simulated 'subt' Object
simulatedtstatt-Statistics and p-Values from a Simulated Microarray Data...
sparncpSemiparametric density estimation for noncentrality...
subexSubsampling-Extrapolation Based Estimation of Proportion of...
subtSubsampling a Microarray Data Set for Estimating Proportion...
summary.nparncpPrint summary for an object of class nparncp
summary.parncpPrint summary for an object of class parncp
summary.sparncpPrint summary for an object of class sparncp
varBVariance of the reflected Bsplines
vcov.ncpestextract inverse Hessian matrix from ncpest class
znormixNormal-mixture based estimation of LFDR and pi0
pi0 documentation built on May 2, 2019, 4:47 p.m.