Man pages for plsgenomics
PLS Analyses for Genomics
| Colon | Gene expression data from Alon et al. (1999) |
| Ecoli | Ecoli gene expression and connectivity data from Kao et al.... |
| gsim | GSIM for binary data |
| gsim.cv | Determination of the ridge regularization parameter and the... |
| leukemia | Gene expression data from Golub et al. (1999) |
| mgsim | GSIM for categorical data |
| mgsim.cv | Determination of the ridge regularization parameter and the... |
| mrpls | Ridge Partial Least Square for categorical data |
| mrpls.cv | Determination of the ridge regularization parameter and the... |
| plsgenomics-internal | Internal plsgenomics Functions |
| pls.lda | Classification with PLS Dimension Reduction and Linear... |
| pls.lda.cv | Determination of the number of latent components to be used... |
| pls.regression | Multivariate Partial Least Squares Regression |
| pls.regression.cv | Determination of the number of latent components to be used... |
| preprocess | preprocess for microarray data |
| rirls.spls | Classification by Ridge Iteratively Reweighted Least Squares... |
| rirls.spls.tune | Tuning parameters (ncomp, lambda.l1, lambda.ridge) for Ridge... |
| rpls | Ridge Partial Least Square for binary data |
| rpls.cv | Determination of the ridge regularization parameter and the... |
| sample.bin | Generates design matrix X with correlated block of covariates... |
| sample.cont | Generates design matrix X with correlated block of covariates... |
| spls.adapt | Classification by Ridge Iteratively Reweighted Least Squares... |
| spls.adapt.tune | Tuning parameters (ncomp, lambda.l1) for Adaptive Sparse PLS... |
| SRBCT | Gene expression data from Khan et al. (2001) |
| TFA.estimate | Prediction of Transcription Factor Activities using PLS |
| variable.selection | Variable selection using the PLS weights |
