Description Usage Value Source References Examples
Gene expression data obtained during Escherichia coli carbon source transition and connectivity data from the RegulonDB data base (Salgado et al., 2001). The experiments and data sets are described in Kao et al. (2003).
1 |
A list with the following components:
CONNECdata |
a (100 x 16) matrix containing the connectivity data for 100 genes and 16 regulators. The data are coded as 1 (positive interaction), 0 (no interaction) and -1 (negative interaction). |
GEdata |
a (100 x 23) matrix containing gene expression data for 100 genes and 23 samples corresponding to differents times during carbon source transition. |
timepoint |
a numeric vector of length 23 containing the time points (in hours) for the 23 samples. |
The data are described in Kao et al. (2004) and can be freely downloaded from http://www.seas.ucla.edu/~liaoj/downloads.html.
K. Kao, Y.-L. Yang, R. Boscolo, C. Sabatti, V. Roychowdhury and J. C. Liao (2004). Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis, PNAS 101, 641–646.
H. Salgado, A. Santos-Zavaleta, S. Gama-Castro, D. Millan-Zarate, E. Diaz-Peredo, F. Sanchez-Solano, E. Perez-Rueda, C. Bonavides-Martinez and J. Collado-Vides (2001). RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12, Nucleic Acids Research 29, 72–74.
1 2 3 4 5 6 7 8 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.