polySegratio: Simulate and test marker dosage for dominant markers in autopolyploids

Perform classic chi-squared tests and Ripol et al(1999) binomial confidence interval approach for autopolyploid dominant markers. Also, dominant markers may be generated for families of offspring where either one or both of the parents possess the marker. Missing values and misclassified markers may be generated at random.

AuthorPeter Baker
Date of publication2014-03-06 07:37:23
MaintainerPeter Baker <p.baker1@uq.edu.au>
LicenseGPL-3
Version0.2-4

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Files in this package

polySegratio/CHANGELOG
polySegratio/DESCRIPTION
polySegratio/NAMESPACE
polySegratio/R
polySegratio/R/addMisclass.R polySegratio/R/addMissing.R polySegratio/R/autoFill.R polySegratio/R/divide.autoMarkers.R polySegratio/R/expected.segRatio.R polySegratio/R/makeLabel.R polySegratio/R/plot.segRatio.R polySegratio/R/plot.simAutoCross.R polySegratio/R/plot.simAutoMarkers.R polySegratio/R/print.divideAutoMarkers.R polySegratio/R/print.segRatio.R polySegratio/R/print.simAutoCross.R polySegratio/R/print.simAutoMarkers.R polySegratio/R/print.testSegRatio.R polySegratio/R/segregationRatios.R polySegratio/R/sim.autoCross.R polySegratio/R/sim.autoMarkers.R polySegratio/R/test.segRatio.R
polySegratio/build
polySegratio/build/vignette.rds
polySegratio/inst
polySegratio/inst/doc
polySegratio/inst/doc/polySegratio-overview.R
polySegratio/inst/doc/polySegratio-overview.Rnw
polySegratio/inst/doc/polySegratio-overview.pdf
polySegratio/man
polySegratio/man/addMisclass.Rd polySegratio/man/addMissing.Rd polySegratio/man/autoFill.Rd polySegratio/man/divide.autoMarkers.Rd polySegratio/man/divideAutoMarkers.Rd polySegratio/man/expected.segRatio.Rd polySegratio/man/makeLabel.Rd polySegratio/man/plot.segRatio.Rd polySegratio/man/polySegratio-package.Rd polySegratio/man/print.segRatio.Rd polySegratio/man/print.simAutoMarkers.Rd polySegratio/man/print.testSegRatio.Rd polySegratio/man/segRatio.Rd polySegratio/man/segregationRatios.Rd polySegratio/man/sim.autoCross.Rd polySegratio/man/sim.autoMarkers.Rd polySegratio/man/simAutoCross.Rd polySegratio/man/simAutoMarkers.Rd polySegratio/man/test.segRatio.Rd polySegratio/man/testSegRatio.Rd
polySegratio/vignettes
polySegratio/vignettes/auto
polySegratio/vignettes/auto/polySegratio-overview.el
polySegratio/vignettes/polySeg.bib
polySegratio/vignettes/polySegratio-overview.Rnw
polySegratio/vignettes/tmp
polySegratio/vignettes/tmp/tmp-006.eps
polySegratio/vignettes/tmp/tmp-006.pdf
polySegratio/vignettes/tmp/tmp-007.eps
polySegratio/vignettes/tmp/tmp-007.pdf
polySegratio/vignettes/tmp/tmp-009.eps
polySegratio/vignettes/tmp/tmp-009.pdf
polySegratio/vignettes/tmp/tmp-010.eps
polySegratio/vignettes/tmp/tmp-010.pdf

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