simAutoMarkers: S3 class simAutoMarkers

In polySegratio: Simulate and test marker dosage for dominant markers in autopolyploids

Description

An S3 class which contains the simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating

Value

markers	matrix of 0,1 dominant markers with individuals as cols and rows as markers
E.segRatio	expected segregation porportions, list with components ratio: segregation proportions, ploidy.level: level of ploidy 4,6,8, ..., ploidy.name: tetraploid, ... , unknown
ploidy.level	the number of homologous chromosomes, either as numeric (single value) or as a character string containing type tetraploid, hexaploid, octoploid, ...
n.markers	number of markers (Default: 500)
n.individuals	number of individuals in the cross (Default: 200)
dose.proportion	the proportion of markers to be simulated in each dosage class. Note that the exact number will be randomly generated from the multinomial distribution
true.doses	list containing dosagedoses generated for each marker for simulation table.dosagessummary of no.s in each dosage namesnames for each dosage such as (SD) single dose, (DD) double dose, SDxSD etc
seg.ratios	segregation proportions as class segRatio
time.generated	date and time data set generated
call	function call used to generate data set

Author(s)

Peter Baker [e-mail]

See Also

expected.segRatio, segRatio, print.simAutoMarkers, plot.simAutoMarkers

polySegratio documentation built on May 2, 2019, 6:09 p.m.