S3 class simAutoMarkers

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Description

An S3 class which contains the simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating

Value

markers

matrix of 0,1 dominant markers with individuals as cols and rows as markers

E.segRatio

expected segregation porportions, list with components ratio: segregation proportions, ploidy.level: level of ploidy 4,6,8, ..., ploidy.name: tetraploid, ... , unknown

ploidy.level

the number of homologous chromosomes, either as numeric (single value) or as a character string containing type tetraploid, hexaploid, octoploid, ...

n.markers

number of markers (Default: 500)

n.individuals

number of individuals in the cross (Default: 200)

dose.proportion

the proportion of markers to be simulated in each dosage class. Note that the exact number will be randomly generated from the multinomial distribution

true.doses

list containing

  • dosagedoses generated for each marker for simulation

  • table.dosagessummary of no.s in each dosage

  • namesnames for each dosage such as (SD) single dose, (DD) double dose, SDxSD etc

seg.ratios

segregation proportions as class segRatio

time.generated

date and time data set generated

call

function call used to generate data set

Author(s)

Peter Baker p.baker1@uq.edu.au

See Also

expected.segRatio, segRatio, print.simAutoMarkers, plot.simAutoMarkers