S3 class simAutoCross

Description

An S3 class which contains simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating given parents with ‘01’, ‘10’ and ‘11’ markers

Value

markers

matrix of 0,1 dominant markers with individuals as cols and rows as markers

true.dosage

true doses for each marker

name.true.dose

names of true doses for each marker

p10

object of class simAutoMarkers for parental type ‘10’

p01

object of class simAutoMarkers for parental type ‘01’

p11

object of class simAutoMarkers for parental type ‘11’

ploidy.level

the number of homologous chromosomes as numeric (single value)

prop.par.type

proportion of markers for each parental type ‘p01’, ‘p10’ and ‘p11’

n.markers

number of markers (Default: 500)

n.individuals

number of individuals in the cross (Default: 200)

dose.proportion

proportion in each dose – if numeric vector is the same for ‘p01’, ‘p10’ and ‘p11’ else a list with components sQuotep01, ‘p10’ and ‘p11’

no.dosage.classes

number in each dosage class

no.parType

number in each parental type

time.generated

time/date when data set generated

seed

seed for random number generator seed which could be used to reproduce results (I hope)

call

matches arguments when function called

Author(s)

Peter Baker p.baker1@uq.edu.au

See Also

sim.autoCross,simAutoMarkers, sim.autoMarkers