simAutoCross: S3 class simAutoCross

In polySegratio: Simulate and test marker dosage for dominant markers in autopolyploids

Description

An S3 class which contains simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating given parents with ‘01’, ‘10’ and ‘11’ markers

Value

markers	matrix of 0,1 dominant markers with individuals as cols and rows as markers
true.dosage	true doses for each marker
name.true.dose	names of true doses for each marker
p10	object of class simAutoMarkers for parental type ‘10’
p01	object of class simAutoMarkers for parental type ‘01’
p11	object of class simAutoMarkers for parental type ‘11’
ploidy.level	the number of homologous chromosomes as numeric (single value)
prop.par.type	proportion of markers for each parental type ‘p01’, ‘p10’ and ‘p11’
n.markers	number of markers (Default: 500)
n.individuals	number of individuals in the cross (Default: 200)
dose.proportion	proportion in each dose – if numeric vector is the same for ‘p01’, ‘p10’ and ‘p11’ else a list with components sQuotep01, ‘p10’ and ‘p11’
no.dosage.classes	number in each dosage class
no.parType	number in each parental type
time.generated	time/date when data set generated
seed	seed for random number generator seed which could be used to reproduce results (I hope)
call	matches arguments when function called

Author(s)

Peter Baker [e-mail]

See Also

sim.autoCross,simAutoMarkers, sim.autoMarkers

polySegratio documentation built on May 2, 2019, 6:09 p.m.