ppstat: Point Process Statistics
Version 0.9.5

This package implements data structures and statistical models and methods for one-dimensional marked point processes.

AuthorNiels Richard Hansen <Niels.R.Hansen@math.ku.dk>.
Date of publication2014-09-23 22:20:04
MaintainerNiels Richard Hansen <Niels.R.Hansen@math.ku.dk>
LicenseGPL (>= 2)
Version0.9.5
URL http://www.math.ku.dk/~richard/ppstat
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ppstat", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

hawkesRate: Intensity for the Hawkes process.
object.size: The memory used to store a process data R object.
Ogata: Multivariate Ogata thinning algorithm
plot-methods: Methods for 'plot' in Package 'processdata'
ppKernel: Generalized linear point process modeling using reproducing...
ppLasso: Generalized linear point process modeling using lasso...
tExp: Truncated Exponential
See all...

All man pages Function index File listing

Man pages

archea: Archea virus genome data.
bSpline: B-Splines bases
computeBasis: Computes function evaluations
const: Indicator function multiplied by a constant.
continuousProcess: Continuous Process
ContinuousProcess-class: Class "ContinuousProcess"
exampleData: Four small example data sets.
exampleDataFrames: Two small example data sets.
Family: Class "Family"
getColumns: Extraction of column(s) from a process data object.
Hawkes: Creates a point process family object
hawkesRate: Intensity for the Hawkes process.
integrate: Integrator of a marked point process
jumpProcess: jumpProcess
JumpProcess-class: Class "JumpProcess"
kernels: Reproducing kernels
markedPointProcess: Marked Point Process
MarkedPointProcess-class: Class "MarkedPointProcess"
MultivariatePointProcess-class: Class '"MultivariatePointProcess"'
object.size: The memory used to store a process data R object.
Ogata: Multivariate Ogata thinning algorithm
plot-methods: Methods for 'plot' in Package 'processdata'
PointProcess-class: Class "PointProcess"
PointProcessKernel-class: Class '"PointProcessKernel"'
pointProcessModel: Construction and estimation of a generalized linear point...
PointProcessModel-class: Class "PointProcessModel"
PointProcessSmooth-class: Class '"PointProcessSmooth"'
ppKernel: Generalized linear point process modeling using reproducing...
ppLasso: Generalized linear point process modeling using lasso...
ppSmooth: Generalized linear point process modeling using smoothing...
ppstat-package: Point Process Statistics
ProcessData-class: Class "ProcessData"
processdata-package: Process Data
ProcessPlotData-class: Class "ProcessPlotData"
registerParBackend: Parallel backend for the 'ppstat' package.
stepInformation: Stepwise point process model selection
str: Compact display of the structure of a process data object.
subset: Subsetting
summary: summary
termPlot-methods: termPlot
tExp: Truncated Exponential
toyData: A small toy data set.
update-methods: update
updateProcessObject: Functions to update old objects with new slots.

Functions

$,ProcessData-method Man page
ContinuousProcess-class Man page
Family Man page
Family-class Man page
Gibbs Man page Source code
Hawkes Man page Source code
JumpProcess-class Man page
MarkedPointProcess-class Man page
MultivariatePointProcess-class Man page
Ogata Man page Source code
PointProcess-class Man page
PointProcessKernel-class Man page
PointProcessModel-class Man page
PointProcessSmooth-class Man page
ProcessData-class Man page
ProcessPlotData-class Man page
[,ContinuousProcess,ANY,ANY,ANY-method Man page
[,ContinuousProcess,character,missing,ANY-method Man page
[,ContinuousProcess,integer,missing,ANY-method Man page
[,ContinuousProcess,logical,missing,ANY-method Man page
[,ContinuousProcess,missing,character,ANY-method Man page
[,ContinuousProcess,missing,integer,ANY-method Man page
[,ContinuousProcess,missing,logical,ANY-method Man page
[,ContinuousProcess,missing,missing,missing-method Man page
[,ContinuousProcess,missing,numeric,ANY-method Man page
[,ContinuousProcess,numeric,missing,ANY-method Man page
[,ContinuousProcess-method Man page
[,JumpProcess,ANY,ANY,ANY-method Man page
[,JumpProcess-method Man page
[,MarkedPointProcess,ANY,ANY,ANY-method Man page
[,MarkedPointProcess,character,missing,ANY-method Man page
[,MarkedPointProcess,integer,missing,ANY-method Man page
[,MarkedPointProcess,logical,missing,ANY-method Man page
[,MarkedPointProcess,missing,character,ANY-method Man page
[,MarkedPointProcess,missing,integer,ANY-method Man page
[,MarkedPointProcess,missing,logical,ANY-method Man page
[,MarkedPointProcess,missing,missing,missing-method Man page
[,MarkedPointProcess,missing,numeric,ANY-method Man page
[,MarkedPointProcess,numeric,missing,ANY-method Man page
[,MarkedPointProcess-method Man page
[,ProcessData,ANY,ANY,ANY-method Man page
[,ProcessData,character,missing,ANY-method Man page
[,ProcessData,integer,missing,ANY-method Man page
[,ProcessData,logical,missing,ANY-method Man page
[,ProcessData,missing,character,ANY-method Man page
[,ProcessData,missing,integer,ANY-method Man page
[,ProcessData,missing,logical,ANY-method Man page
[,ProcessData,missing,missing,missing-method Man page
[,ProcessData,missing,numeric,ANY-method Man page
[,ProcessData,numeric,missing,ANY-method Man page
[,ProcessData-method Man page
affine Source code
allTest Source code
archeaVirus Man page
bSpline Man page Source code
coefficients,PointProcessModel-method Man page
coefficients<- Man page
coefficients<-,PointProcessKernel,numeric-method Man page
coefficients<-,PointProcessModel,numeric-method Man page
colNames Man page
colNames,ContinuousProcess,character-method Man page
colNames,ContinuousProcess,missing-method Man page
colNames,MarkedPointProcess,character-method Man page
colNames,MarkedPointProcess,missing-method Man page
colNames,ProcessData,character-method Man page
colNames,ProcessData,missing-method Man page
colNames<- Man page
computeBasis Man page
computeBasis,PointProcessModel,ANY-method Man page
computeBasis-method Man page
computeDDMinusLogLikelihood Man page
computeDDMinusLogLikelihood,PointProcessKernel-method Man page
computeDDMinusLogLikelihood,PointProcessModel-method Man page
computeDDMinusLogLikelihood,PointProcessSmooth-method Man page
computeDMinusLogLikelihood Man page
computeDMinusLogLikelihood,PointProcessKernel-method Man page
computeDMinusLogLikelihood,PointProcessModel-method Man page
computeDMinusLogLikelihood,PointProcessSmooth-method Man page
computeGrid Source code
computeKnots Source code
computeLinearPredictor Man page
computeLinearPredictor,PointProcessModel-method Man page
computeMinusLogLikelihood Man page
computeMinusLogLikelihood,PointProcess-method Man page
computeMinusLogLikelihood,PointProcessKernel-method Man page
computeMinusLogLikelihood,PointProcessModel-method Man page
computeMinusLogLikelihood,PointProcessSmooth-method Man page
computeModelMatrix Man page
computeModelMatrix,PointProcessModel-method Man page
const Man page Source code
contExam Man page
continuousData Man page
continuousProcess Man page
continuousProcess,ContinuousProcess-method Man page
continuousProcess,data.frame-method Man page
continuousProcess,factor.frame-method Man page
continuousProcess,list-method Man page
continuousProcess,matrix-method Man page
continuousProcess,numeric-method Man page
dim,ContinuousProcess-method Man page
dim,MarkedPointProcess-method Man page
dim,ProcessData-method Man page
example Man page
exampleDataFrames Man page
factExam Man page
family,Family-method Man page
family,PointProcess-method Man page
formula,MultivariatePointProcess-method Man page
formula,PointProcess-method Man page
formula<-,PointProcess,formula-method Man page
gaussianKernel Man page Source code
getColumns Man page
getColumns,ContinuousProcess,character-method Man page
getColumns,ContinuousProcess,numeric-method Man page
getColumns,MarkedPointProcess,character-method Man page
getColumns,MarkedPointProcess,numeric-method Man page
getColumns,ProcessData,character-method Man page
getColumns,ProcessData,logical-method Man page
getColumns,ProcessData,numeric-method Man page
getEquiDistance Man page
getEquiDistance,ContinuousProcess-method Man page
getFactors Man page
getFactors,ContinuousProcess-method Man page
getId Man page
getId,ContinuousProcess-method Man page
getId,ProcessData-method Man page
getInformation Man page
getInformation,PointProcessModel-method Man page
getLinearFilter Man page
getLinearFilter,MultivariatePointProcess-method Man page
getLinearFilter,PointProcessModel-method Man page
getMarkType Man page
getMarkType,MarkedPointProcess-method Man page
getMarkValue Man page
getMarkValue,MarkedPointProcess-method Man page
getModelMatrix Man page
getModelMatrix,PointProcessModel,ANY-method Man page
getNumerics Man page
getNumerics,ContinuousProcess-method Man page
getPlotData Man page
getPlotData,ContinuousProcess-method Man page
getPlotData,JumpProcess-method Man page
getPlotData,MarkedPointProcess,character-method Man page
getPlotData,MarkedPointProcess-method Man page
getPointId Man page
getPointId,MarkedPointProcess-method Man page
getPointPointer Man page
getPointPointer,MarkedPointProcess,character-method Man page
getPointPointer,MarkedPointProcess,missing-method Man page
getPointPosition Man page
getPointPosition,MarkedPointProcess-method Man page
getPointTime Man page
getPointTime,MarkedPointProcess-method Man page
getPosition Man page
getPosition,ContinuousProcess-method Man page
getRegisteredParBackend Man page Source code
getTime Man page
getTime,ContinuousProcess-method Man page
getUnitData Man page
getUnitData,ContinuousProcess-method Man page
getUnitData,ProcessData-method Man page
getValue Man page
getValue,ContinuousProcess-method Man page
hawkesRate Man page Source code
integrator Man page
integrator,MarkedPointProcess-method Man page
jumpExam Man page
jumpProcess Man page
jumpProcess,MarkedPointProcess-method Man page
jumpProcess,data.frame-method Man page
k__ Source code
lapplyParallel Man page Source code
makeLink Man page Source code
markedPointProcess Man page
markedPointProcess,MarkedPointProcess,missing-method Man page
markedPointProcess,MarkedPointProcess-method Man page
markedPointProcess,data.frame,ANY-method Man page
markedPointProcess,data.frame,ContinuousProcess-method Man page
markedPointProcess,data.frame,data.frame-method Man page
markedPointProcess,data.frame,factor.frame-method Man page
markedPointProcess,data.frame,missing-method Man page
markedPointProcess,data.frame,vector-method Man page
markedPointProcess,data.frame-method Man page
markedPointProcess,vector,ANY-method Man page
markedPointProcess,vector,data.frame-method Man page
markedPointProcess,vector,vector-method Man page
object.size,ContinuousProcess-method Man page
object.size,MarkedPointProcess-method Man page
object.size,ProcessData-method Man page
onLoad Source code
onUnload Source code
penalty Man page
penalty,PointProcessModel-method Man page
penalty<- Man page
penalty<-,PointProcessModel,numeric-method Man page
plot,ContinuousProcess,character-method Man page
plot,ContinuousProcess,missing-method Man page
plot,ContinuousProcess,numeric-method Man page
plot,ContinuousProcess-method Man page
plot,JumpProcess,missing-method Man page
plot,JumpProcess-method Man page
plot,MarkedPointProcess,character-method Man page
plot,MarkedPointProcess,missing-method Man page
plot,MarkedPointProcess-method Man page
plot,PointProcessModel-method Man page
plot,ProcessPlotData,missing-method Man page
plot,ProcessPlotData-method Man page
pointData Man page
pointExam Man page
pointProcessModel Man page Source code
ppKernel Man page Source code
ppLasso Man page Source code
ppSmooth Man page Source code
ppmFit Man page
ppmFit,MultivariatePointProcess-method Man page
ppmFit,PointProcessModel-method Man page
ppstat Man page
ppstat-package Man page
predict,PointProcessModel-method Man page
print.summary.glppm Man page
print.summary.ppm Source code
process Man page
process,data.frame-method Man page
processData Man page
processData,PointProcess-method Man page
processData<- Man page
processData<-,PointProcess-method Man page
processdata Man page
processdata-package Man page
range2factor.frame Source code
registerParBackend Man page Source code
response Man page
response,PointProcess-method Man page
s__ Source code
safeLog Source code
setModelMatrix<- Man page
setModelMatrix<-,PointProcessModel,ANY-method Man page
setUnitData Man page
setUnitData,ProcessData-method Man page
show,ContinuousProcess-method Man page
show,PointProcessModel-method Man page
simulate,MultivariatePointProcess-method Man page
sobolevKernel Man page Source code Source code
stepInformation Man page
stepInformation,MultivariatePointProcess-method Man page
stepInformation,PointProcessModel-method Man page
str,ContinuousProcess-method Man page
str,MarkedPointProcess-method Man page
str,ProcessData-method Man page
subset,ContinuousProcess-method Man page
subset,JumpProcess-method Man page
subset,MarkedPointProcess-method Man page
subset,PointProcessModel-method Man page
subset,ProcessData-method Man page
summary,ContinuousProcess-method Man page
summary,MultivariatePointProcess-method Man page
summary,PointProcessKernel-method Man page
summary,PointProcessModel-method Man page
summary,PointProcessSmooth-method Man page
tExp Man page Source code
termPlot Man page
termPlot,MultivariatePointProcess-method Man page
termPlot,PointProcessModel-method Man page
toyData Man page
unitData Man page
unsubset Man page
unsubset,ContinuousProcess-method Man page
unsubset,MarkedPointProcess-method Man page
unsubset,ProcessData-method Man page
update,MultivariatePointProcess-method Man page
update,PointProcessKernel-method Man page
update,PointProcessModel-method Man page
update,PointProcessSmooth-method Man page
update-methods Man page
updateProcessObject Man page
updateProcessObject,ContinuousProcess-method Man page
vcov,PointProcessModel-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClass.R
R/AllClassPpstat.R
R/AllGeneric.R
R/AllGenericPpstat.R
R/ContinuousProcess.R
R/Family.R
R/JumpProcess.R
R/MarkedPointProcess.R
R/MultivariatePointProcess.R
R/PointProcess.R
R/PointProcessKernel.R
R/PointProcessLasso.R
R/PointProcessModel.R
R/PointProcessSmooth.R
R/ProcessData.R
R/ProcessPlotData.R
R/Simulation.R
R/allTest.R
R/kernels.R
R/ppstat.R
R/registerParBackend.R
R/zzz.R
build
build/vignette.rds
data
data/archeaVirus.RData
data/example.RData
data/exampleDataFrames.RData
data/toyData.RData
demo
demo/00Index
demo/dataContainers.R
demo/toyModels.R
inst
inst/NEWS.Rd
inst/doc
inst/doc/Introduction.R
inst/doc/Introduction.Rnw
inst/doc/Introduction.pdf
inst/doc/ppstat_computations.Rnw
inst/doc/ppstat_computations.pdf
inst/unitTests
inst/unitTests/runitppstat.R
inst/unitTests/runitprocessdata.R
man
man/ContinuousProcess-class.Rd
man/Family.Rd
man/Hawkes.Rd
man/JumpProcess-class.Rd
man/MarkedPointProcess-class.Rd
man/MultivariatePointProcess-class.Rd
man/Ogata.Rd
man/PointProcess-class.Rd
man/PointProcessKernel-class.Rd
man/PointProcessModel-class.Rd
man/PointProcessSmooth-class.Rd
man/ProcessData-class.Rd
man/ProcessPlotData-class.Rd
man/archea.Rd
man/bSpline.Rd
man/computeBasis.Rd
man/const.Rd
man/continuousProcess.Rd
man/exampleData.Rd
man/exampleDataFrames.Rd
man/getColumns.Rd
man/hawkesRate.Rd
man/integrate.Rd
man/jumpProcess.Rd
man/kernels.Rd
man/markedPointProcess.Rd
man/object.size.Rd
man/plot-methods.Rd
man/pointProcessModel.Rd
man/ppKernel.Rd
man/ppLasso.Rd
man/ppSmooth.Rd
man/ppstat-package.Rd
man/processdata-package.Rd
man/registerParBackend.Rd
man/stepInformation.Rd
man/str.Rd
man/subset.Rd
man/summary.Rd
man/tExp.Rd
man/termPlot-methods.Rd
man/toyData.Rd
man/update-methods.Rd
man/updateProcessObject.Rd
src
src/bsplvd.f
src/modelMatrix.c
src/sgram.f
tests
tests/doRUnit.R
vignettes
vignettes/Introduction.Rnw
vignettes/ppstat_computations.Rnw
ppstat documentation built on May 21, 2017, 1:28 a.m.

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