ppstat: Point Process Statistics

This package implements data structures and statistical models and methods for one-dimensional marked point processes.

AuthorNiels Richard Hansen <Niels.R.Hansen@math.ku.dk>.
Date of publication2014-09-23 22:20:04
MaintainerNiels Richard Hansen <Niels.R.Hansen@math.ku.dk>
LicenseGPL (>= 2)
Version0.9.5
http://www.math.ku.dk/~richard/ppstat

View on R-Forge

Man pages

archea: Archea virus genome data.

bSpline: B-Splines bases

computeBasis: Computes function evaluations

const: Indicator function multiplied by a constant.

continuousProcess: Continuous Process

ContinuousProcess-class: Class "ContinuousProcess"

exampleData: Four small example data sets.

exampleDataFrames: Two small example data sets.

Family: Class "Family"

getColumns: Extraction of column(s) from a process data object.

Hawkes: Creates a point process family object

hawkesRate: Intensity for the Hawkes process.

integrate: Integrator of a marked point process

jumpProcess: jumpProcess

JumpProcess-class: Class "JumpProcess"

kernels: Reproducing kernels

markedPointProcess: Marked Point Process

MarkedPointProcess-class: Class "MarkedPointProcess"

MultivariatePointProcess-class: Class '"MultivariatePointProcess"'

object.size: The memory used to store a process data R object.

Ogata: Multivariate Ogata thinning algorithm

plot-methods: Methods for 'plot' in Package 'processdata'

PointProcess-class: Class "PointProcess"

PointProcessKernel-class: Class '"PointProcessKernel"'

pointProcessModel: Construction and estimation of a generalized linear point...

PointProcessModel-class: Class "PointProcessModel"

PointProcessSmooth-class: Class '"PointProcessSmooth"'

ppKernel: Generalized linear point process modeling using reproducing...

ppLasso: Generalized linear point process modeling using lasso...

ppSmooth: Generalized linear point process modeling using smoothing...

ppstat-package: Point Process Statistics

ProcessData-class: Class "ProcessData"

processdata-package: Process Data

ProcessPlotData-class: Class "ProcessPlotData"

registerParBackend: Parallel backend for the 'ppstat' package.

stepInformation: Stepwise point process model selection

str: Compact display of the structure of a process data object.

subset: Subsetting

summary: summary

termPlot-methods: termPlot

tExp: Truncated Exponential

toyData: A small toy data set.

update-methods: update

updateProcessObject: Functions to update old objects with new slots.

Functions

archeaVirus Man page
bSpline Man page
coefficients<- Man page
coefficients<-,PointProcessKernel,numeric-method Man page
coefficients,PointProcessModel-method Man page
coefficients<-,PointProcessModel,numeric-method Man page
colNames Man page
colNames<- Man page
colNames,ContinuousProcess,character-method Man page
colNames,ContinuousProcess,missing-method Man page
colNames,MarkedPointProcess,character-method Man page
colNames,MarkedPointProcess,missing-method Man page
colNames,ProcessData,character-method Man page
colNames,ProcessData,missing-method Man page
computeBasis Man page
computeBasis-method Man page
computeBasis,PointProcessModel,ANY-method Man page
computeDDMinusLogLikelihood Man page
computeDDMinusLogLikelihood,PointProcessKernel-method Man page
computeDDMinusLogLikelihood,PointProcessModel-method Man page
computeDDMinusLogLikelihood,PointProcessSmooth-method Man page
computeDMinusLogLikelihood Man page
computeDMinusLogLikelihood,PointProcessKernel-method Man page
computeDMinusLogLikelihood,PointProcessModel-method Man page
computeDMinusLogLikelihood,PointProcessSmooth-method Man page
computeLinearPredictor Man page
computeLinearPredictor,PointProcessModel-method Man page
computeMinusLogLikelihood Man page
computeMinusLogLikelihood,PointProcessKernel-method Man page
computeMinusLogLikelihood,PointProcess-method Man page
computeMinusLogLikelihood,PointProcessModel-method Man page
computeMinusLogLikelihood,PointProcessSmooth-method Man page
computeModelMatrix Man page
computeModelMatrix,PointProcessModel-method Man page
const Man page
contExam Man page
continuousData Man page
continuousProcess Man page
[,ContinuousProcess,ANY,ANY,ANY-method Man page
[,ContinuousProcess,character,missing,ANY-method Man page
ContinuousProcess-class Man page
continuousProcess,ContinuousProcess-method Man page
continuousProcess,data.frame-method Man page
continuousProcess,factor.frame-method Man page
[,ContinuousProcess,integer,missing,ANY-method Man page
continuousProcess,list-method Man page
[,ContinuousProcess,logical,missing,ANY-method Man page
continuousProcess,matrix-method Man page
[,ContinuousProcess-method Man page
[,ContinuousProcess,missing,character,ANY-method Man page
[,ContinuousProcess,missing,integer,ANY-method Man page
[,ContinuousProcess,missing,logical,ANY-method Man page
[,ContinuousProcess,missing,missing,missing-method Man page
[,ContinuousProcess,missing,numeric,ANY-method Man page
continuousProcess,numeric-method Man page
[,ContinuousProcess,numeric,missing,ANY-method Man page
dim,ContinuousProcess-method Man page
dim,MarkedPointProcess-method Man page
dim,ProcessData-method Man page
example Man page
exampleDataFrames Man page
factExam Man page
Family Man page
Family-class Man page
family,Family-method Man page
family,PointProcess-method Man page
formula,MultivariatePointProcess-method Man page
formula<-,PointProcess,formula-method Man page
formula,PointProcess-method Man page
gaussianKernel Man page
getColumns Man page
getColumns,ContinuousProcess,character-method Man page
getColumns,ContinuousProcess,numeric-method Man page
getColumns,MarkedPointProcess,character-method Man page
getColumns,MarkedPointProcess,numeric-method Man page
getColumns,ProcessData,character-method Man page
getColumns,ProcessData,logical-method Man page
getColumns,ProcessData,numeric-method Man page
getEquiDistance Man page
getEquiDistance,ContinuousProcess-method Man page
getFactors Man page
getFactors,ContinuousProcess-method Man page
getId Man page
getId,ContinuousProcess-method Man page
getId,ProcessData-method Man page
getInformation Man page
getInformation,PointProcessModel-method Man page
getLinearFilter Man page
getLinearFilter,MultivariatePointProcess-method Man page
getLinearFilter,PointProcessModel-method Man page
getMarkType Man page
getMarkType,MarkedPointProcess-method Man page
getMarkValue Man page
getMarkValue,MarkedPointProcess-method Man page
getModelMatrix Man page
getModelMatrix,PointProcessModel,ANY-method Man page
getNumerics Man page
getNumerics,ContinuousProcess-method Man page
getPlotData Man page
getPlotData,ContinuousProcess-method Man page
getPlotData,JumpProcess-method Man page
getPlotData,MarkedPointProcess,character-method Man page
getPlotData,MarkedPointProcess-method Man page
getPointId Man page
getPointId,MarkedPointProcess-method Man page
getPointPointer Man page
getPointPointer,MarkedPointProcess,character-method Man page
getPointPointer,MarkedPointProcess,missing-method Man page
getPointPosition Man page
getPointPosition,MarkedPointProcess-method Man page
getPointTime Man page
getPointTime,MarkedPointProcess-method Man page
getPosition Man page
getPosition,ContinuousProcess-method Man page
getRegisteredParBackend Man page
getTime Man page
getTime,ContinuousProcess-method Man page
getUnitData Man page
getUnitData,ContinuousProcess-method Man page
getUnitData,ProcessData-method Man page
getValue Man page
getValue,ContinuousProcess-method Man page
Gibbs Man page
Hawkes Man page
hawkesRate Man page
integrator Man page
integrator,MarkedPointProcess-method Man page
jumpExam Man page
jumpProcess Man page
[,JumpProcess,ANY,ANY,ANY-method Man page
JumpProcess-class Man page
jumpProcess,data.frame-method Man page
jumpProcess,MarkedPointProcess-method Man page
[,JumpProcess-method Man page
lapplyParallel Man page
makeLink Man page
markedPointProcess Man page
[,MarkedPointProcess,ANY,ANY,ANY-method Man page
[,MarkedPointProcess,character,missing,ANY-method Man page
MarkedPointProcess-class Man page
markedPointProcess,data.frame,ANY-method Man page
markedPointProcess,data.frame,ContinuousProcess-method Man page
markedPointProcess,data.frame,data.frame-method Man page
markedPointProcess,data.frame,factor.frame-method Man page
markedPointProcess,data.frame-method Man page
markedPointProcess,data.frame,missing-method Man page
markedPointProcess,data.frame,vector-method Man page
[,MarkedPointProcess,integer,missing,ANY-method Man page
[,MarkedPointProcess,logical,missing,ANY-method Man page
markedPointProcess,MarkedPointProcess-method Man page
markedPointProcess,MarkedPointProcess,missing-method Man page
[,MarkedPointProcess-method Man page
[,MarkedPointProcess,missing,character,ANY-method Man page
[,MarkedPointProcess,missing,integer,ANY-method Man page
[,MarkedPointProcess,missing,logical,ANY-method Man page
[,MarkedPointProcess,missing,missing,missing-method Man page
[,MarkedPointProcess,missing,numeric,ANY-method Man page
[,MarkedPointProcess,numeric,missing,ANY-method Man page
markedPointProcess,vector,ANY-method Man page
markedPointProcess,vector,data.frame-method Man page
markedPointProcess,vector,vector-method Man page
MultivariatePointProcess-class Man page
object.size,ContinuousProcess-method Man page
object.size,MarkedPointProcess-method Man page
object.size,ProcessData-method Man page
Ogata Man page
penalty Man page
penalty<- Man page
penalty,PointProcessModel-method Man page
penalty<-,PointProcessModel,numeric-method Man page
plot,ContinuousProcess,character-method Man page
plot,ContinuousProcess-method Man page
plot,ContinuousProcess,missing-method Man page
plot,ContinuousProcess,numeric-method Man page
plot,JumpProcess-method Man page
plot,JumpProcess,missing-method Man page
plot,MarkedPointProcess,character-method Man page
plot,MarkedPointProcess-method Man page
plot,MarkedPointProcess,missing-method Man page
plot,PointProcessModel-method Man page
plot,ProcessPlotData-method Man page
plot,ProcessPlotData,missing-method Man page
pointData Man page
pointExam Man page
PointProcess-class Man page
PointProcessKernel-class Man page
pointProcessModel Man page
PointProcessModel-class Man page
PointProcessSmooth-class Man page
ppKernel Man page
ppLasso Man page
ppmFit Man page
ppmFit,MultivariatePointProcess-method Man page
ppmFit,PointProcessModel-method Man page
ppSmooth Man page
ppstat Man page
ppstat-package Man page
predict,PointProcessModel-method Man page
print.summary.glppm Man page
process Man page
processdata Man page
processData Man page
processData<- Man page
[,ProcessData,ANY,ANY,ANY-method Man page
[,ProcessData,character,missing,ANY-method Man page
ProcessData-class Man page
process,data.frame-method Man page
[,ProcessData,integer,missing,ANY-method Man page
[,ProcessData,logical,missing,ANY-method Man page
[,ProcessData-method Man page
$,ProcessData-method Man page
[,ProcessData,missing,character,ANY-method Man page
[,ProcessData,missing,integer,ANY-method Man page
[,ProcessData,missing,logical,ANY-method Man page
[,ProcessData,missing,missing,missing-method Man page
[,ProcessData,missing,numeric,ANY-method Man page
[,ProcessData,numeric,missing,ANY-method Man page
processdata-package Man page
processData<-,PointProcess-method Man page
processData,PointProcess-method Man page
ProcessPlotData-class Man page
registerParBackend Man page
response Man page
response,PointProcess-method Man page
setModelMatrix<- Man page
setModelMatrix<-,PointProcessModel,ANY-method Man page
setUnitData Man page
setUnitData,ProcessData-method Man page
show,ContinuousProcess-method Man page
show,PointProcessModel-method Man page
simulate,MultivariatePointProcess-method Man page
sobolevKernel Man page
stepInformation Man page
stepInformation,MultivariatePointProcess-method Man page
stepInformation,PointProcessModel-method Man page
str,ContinuousProcess-method Man page
str,MarkedPointProcess-method Man page
str,ProcessData-method Man page
subset,ContinuousProcess-method Man page
subset,JumpProcess-method Man page
subset,MarkedPointProcess-method Man page
subset,PointProcessModel-method Man page
subset,ProcessData-method Man page
summary,ContinuousProcess-method Man page
summary,MultivariatePointProcess-method Man page
summary,PointProcessKernel-method Man page
summary,PointProcessModel-method Man page
summary,PointProcessSmooth-method Man page
termPlot Man page
termPlot,MultivariatePointProcess-method Man page
termPlot,PointProcessModel-method Man page
tExp Man page
toyData Man page
unitData Man page
unsubset Man page
unsubset,ContinuousProcess-method Man page
unsubset,MarkedPointProcess-method Man page
unsubset,ProcessData-method Man page
update-methods Man page
update,MultivariatePointProcess-method Man page
update,PointProcessKernel-method Man page
update,PointProcessModel-method Man page
update,PointProcessSmooth-method Man page
updateProcessObject Man page
updateProcessObject,ContinuousProcess-method Man page
vcov,PointProcessModel-method Man page

Files

ppstat/DESCRIPTION
ppstat/NAMESPACE
ppstat/R
ppstat/R/AllClass.R ppstat/R/AllClassPpstat.R ppstat/R/AllGeneric.R ppstat/R/AllGenericPpstat.R ppstat/R/ContinuousProcess.R ppstat/R/Family.R ppstat/R/JumpProcess.R ppstat/R/MarkedPointProcess.R ppstat/R/MultivariatePointProcess.R ppstat/R/PointProcess.R ppstat/R/PointProcessKernel.R ppstat/R/PointProcessLasso.R ppstat/R/PointProcessModel.R ppstat/R/PointProcessSmooth.R ppstat/R/ProcessData.R ppstat/R/ProcessPlotData.R ppstat/R/Simulation.R ppstat/R/allTest.R ppstat/R/kernels.R ppstat/R/ppstat.R ppstat/R/registerParBackend.R ppstat/R/zzz.R
ppstat/build
ppstat/build/vignette.rds
ppstat/data
ppstat/data/archeaVirus.RData
ppstat/data/example.RData
ppstat/data/exampleDataFrames.RData
ppstat/data/toyData.RData
ppstat/demo
ppstat/demo/00Index
ppstat/demo/dataContainers.R
ppstat/demo/toyModels.R
ppstat/inst
ppstat/inst/NEWS.Rd
ppstat/inst/doc
ppstat/inst/doc/Introduction.R
ppstat/inst/doc/Introduction.Rnw
ppstat/inst/doc/Introduction.pdf
ppstat/inst/doc/ppstat_computations.Rnw
ppstat/inst/doc/ppstat_computations.pdf
ppstat/inst/unitTests
ppstat/inst/unitTests/runitppstat.R
ppstat/inst/unitTests/runitprocessdata.R
ppstat/man
ppstat/man/ContinuousProcess-class.Rd ppstat/man/Family.Rd ppstat/man/Hawkes.Rd ppstat/man/JumpProcess-class.Rd ppstat/man/MarkedPointProcess-class.Rd ppstat/man/MultivariatePointProcess-class.Rd ppstat/man/Ogata.Rd ppstat/man/PointProcess-class.Rd ppstat/man/PointProcessKernel-class.Rd ppstat/man/PointProcessModel-class.Rd ppstat/man/PointProcessSmooth-class.Rd ppstat/man/ProcessData-class.Rd ppstat/man/ProcessPlotData-class.Rd ppstat/man/archea.Rd ppstat/man/bSpline.Rd ppstat/man/computeBasis.Rd ppstat/man/const.Rd ppstat/man/continuousProcess.Rd ppstat/man/exampleData.Rd ppstat/man/exampleDataFrames.Rd ppstat/man/getColumns.Rd ppstat/man/hawkesRate.Rd ppstat/man/integrate.Rd ppstat/man/jumpProcess.Rd ppstat/man/kernels.Rd ppstat/man/markedPointProcess.Rd ppstat/man/object.size.Rd ppstat/man/plot-methods.Rd ppstat/man/pointProcessModel.Rd ppstat/man/ppKernel.Rd ppstat/man/ppLasso.Rd ppstat/man/ppSmooth.Rd ppstat/man/ppstat-package.Rd ppstat/man/processdata-package.Rd ppstat/man/registerParBackend.Rd ppstat/man/stepInformation.Rd ppstat/man/str.Rd ppstat/man/subset.Rd ppstat/man/summary.Rd ppstat/man/tExp.Rd ppstat/man/termPlot-methods.Rd ppstat/man/toyData.Rd ppstat/man/update-methods.Rd ppstat/man/updateProcessObject.Rd
ppstat/src
ppstat/src/bsplvd.f
ppstat/src/modelMatrix.c
ppstat/src/sgram.f
ppstat/tests
ppstat/tests/doRUnit.R
ppstat/vignettes
ppstat/vignettes/Introduction.Rnw
ppstat/vignettes/ppstat_computations.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.