Man pages for qfaBayes
Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).
| cdc13_1_Raw_extratrim_15 | cdc13_1_Raw_extratrim_15 |
| funcARRAYTRANS | Creates and transposes an array |
| funcARRAYTRANS_J | Creates and transposes an array (JHM) |
| funcColORF | Adds NA values at the end of an ORF to give consistent Col... |
| funcIDorder | Order by ORF and ID coloumn |
| funcNoORF | Gives number of repeats for each ORF |
| funcNoSum | Gives running total for the number of repeats for each ORF |
| funcREMOVE | Filter by Screen Name, Temprature and Master Plate Number |
| funcRowRep | Adds NA values at the end of a repeat to give consistent row... |
| funcSCALING | Scales data by maximum theroetical value for IOD |
| funcXY | Sorts data into array with correct dimensions |
| funcXY_J | Sorts data into array with correct dimensions (JHM) |
| IHM_main | Runs IHM C code |
| IHM_MDRxMDP_postpro | Performs post processing for IHM |
| JHM_main | Runs JHM C code |
| JHM_postpro | Performs post processing for JHM |
| plot_IHM_simple | plot IHM_simple_C output |
| plot_JHM_simple | plot JHM_simple_C output |
| plot_SHM_simple | plot SHM_simple_C output |
| priors_IHM | priors_IHM |
| priors_JHM | priors_JHM |
| priors_SHM | priors_SHM |
| qfa.variables | Gives experimental variables from QFA data (colonyzer.read... |
| SHM_main | Runs SHM C code |
| SHM_postpro | Performs post processing for SHM |
| tuning_IHM | tuning_IHM |
| tuning_JHM | tuning_JHM |
| tuning_SHM | tuning_SHM |
| URA3_Raw_extratrim_15 | URA3_Raw_extratrim_15 |
| visual_convergence_simple_check_IHM | Gives a trace plot for one of every parameter type to check... |
| visual_convergence_simple_check_JHM | Gives a trace plot for one of every parameter type to check... |
| visual_convergence_simple_check_SHM | Gives a trace plot for one of every parameter type to check... |
