JHM_main: Runs JHM C code

In qfaBayes: Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).

Description

For use with JHM post processed Colonyzer output. Runs JHM C code

Usage

JHM_main(burn,iters,thin,adaptive_phase,QFA.IA,QFA.yA,
  QFA.xA,QFA.NoORFA,QFA.NoTIMEA,QFA.IB,QFA.yB,QFA.xB,QFA.NoORFB,
  QFA.NoTIMEB,PRIORS,TUNING)

Arguments

burn	Burn-in period
iters	Number of iterations in final sample
thin	Amount of thinning (after burn-in)
adaptive_phase	Total length of adaptive phase within burn in period
QFA.IA	QFA.IA
QFA.yA	QFA.yA
QFA.xA	QFA.xA
QFA.NoORFA	QFA.NoORFA
QFA.NoTIMEA	QFA.NoTIMEA
QFA.IB	QFA.IB
QFA.yB	QFA.yB
QFA.xB	QFA.xB
QFA.NoORFB	QFA.NoORFB
QFA.NoTIMEB	QFA.NoTIMEB
PRIORS	PRIORS
TUNING	TUNING

Value

JHM output

qfaBayes documentation built on May 2, 2019, 4:12 p.m.