statistical inference and modeling of genealogies generated by epidemic and ecological processes

binaryDatedTree | Create binary dated tree. The binaryDatedTree class includes... |

calculate.cluster.size.moments.from.model | Calculate cluster size moments from model |

calculate.cluster.size.moments.from.tree | Calculate cluster size moments from tree |

coalescent.log.likelihood | Compute the likelihood of a gene genealogy conditonal on a... |

phylo.source.attribution | Compute infector probabilities between all pairs of sampled... |

simulate.binary.dated.tree | Simulate a binary dated tree using a coalescent model and... |

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