API for rcolgem
statistical inference and modeling of genealogies generated by epidemic and ecological processes

Global functions
DatedTree Source code
binaryDatedTree Man page Source code
build.demographic.process Source code
calculate.cluster.size.distr.from.tree Source code
calculate.cluster.size.moments.from.model Man page Source code
calculate.cluster.size.moments.from.tree Man page Source code
calculate.edgemap Source code
calculate.heights Source code
calculate.internal.states Source code
calculate.internal.states.unstructuredModel Source code
coalescent.log.likelihood Man page Source code
coalescent.log.likelihood.fgy Source code
coalescent.log.likelihood.fgy2 Source code
coalescent.log.likelihood.unstructuredModel Source code
dAL Source code
end.discrete.rates Source code
extant.at.height Source code
finite_size_correction Source code
make.fgy Source code
nfer.sample.states.from.annotation Source code
nitialize.states Source code
phylo.source.attribution Man page Source code
pseudoLogLikelihood0.fgy Source code
rescale.binaryDatedTree Source code
show.demographic.process Source code
sim.co.tree Source code
sim.co.tree.fgy Source code
simulate.binary.dated.tree Man page Source code
simulate.binary.dated.tree.0 Source code
simulate.binary.dated.tree.2 Source code
simulate.binary.dated.tree.fgy Source code
simulate.binary.dated.tree.fgy.2 Source code
simulate.binary.dated.tree.unstructured Source code
simulateTreeCpp2 Source code
solve.model Source code
solve.model.unstructured Source code
start.discrete.rates Source code
updateWCpp Source code
update_mstates_arma Source code
rcolgem documentation built on May 31, 2017, 3:41 a.m.