rcolony: Tools for implementation and visualisation of Colony2 and its outputs.

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The RColony package provides tools for the implementation of the Colony pedigree analysis software. In addition it provides tools for visualising, and summarising the results of the Colony analyses.

Author
Owen R. Jones
Date of publication
2013-05-15 09:46:01
Maintainer
Owen R. Jones <jones@demogr.mpg.de>
License
GPL
Version
1.3

View on R-Forge

Man pages

build.colony.input
A wizard-like function to help build Colony2 input files.
categoricalxy
A function to plot 2 dimensional categorical data as...
get.colony.data
This function creates a data object from the Colony2 outputs.
get.interm.data
A function to collect intermediate data produced by Colony2...
get.parentage
A function to extract the paternity and maternity information...
monitor.colony
A function to monitor the intermediate results of the...
plotsibs
A function to plot sibships (full and half-sibs) in an x-y...
rcolony-package
Tools for implementation and visualisation of Colony and its...
run.colony
A function to run Colony2 from within the R environment.
testdata
Example dataset for the rcolony package

Files in this package

rcolony/DESCRIPTION
rcolony/NAMESPACE
rcolony/R
rcolony/R/build.colony.input.R
rcolony/R/categoricalxy.R
rcolony/R/get.colony.data.R
rcolony/R/get.interm.data.R
rcolony/R/get.parentage.R
rcolony/R/monitor.colony.R
rcolony/R/plotsibs.R
rcolony/R/run.colony.R
rcolony/data
rcolony/data/testdata.rda
rcolony/man
rcolony/man/build.colony.input.Rd
rcolony/man/categoricalxy.Rd
rcolony/man/get.colony.data.Rd
rcolony/man/get.interm.data.Rd
rcolony/man/get.parentage.Rd
rcolony/man/monitor.colony.Rd
rcolony/man/plotsibs.Rd
rcolony/man/rcolony-package.Rd
rcolony/man/run.colony.Rd
rcolony/man/testdata.Rd