rcolony: Tools for implementation and visualisation of Colony2 and its outputs.
Version 1.3

The RColony package provides tools for the implementation of the Colony pedigree analysis software. In addition it provides tools for visualising, and summarising the results of the Colony analyses.

AuthorOwen R. Jones
Date of publication2013-05-15 09:46:01
MaintainerOwen R. Jones <jones@demogr.mpg.de>
LicenseGPL
Version1.3
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rcolony", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

build.colony.input: A wizard-like function to help build Colony2 input files.
categoricalxy: A function to plot 2 dimensional categorical data as...
monitor.colony: A function to monitor the intermediate results of the...
plotsibs: A function to plot sibships (full and half-sibs) in an x-y...
rcolony-package: Tools for implementation and visualisation of Colony and its...
run.colony: A function to run Colony2 from within the R environment.
testdata: Example dataset for the rcolony package
See all...

All man pages Function index File listing

Man pages

build.colony.input: A wizard-like function to help build Colony2 input files.
categoricalxy: A function to plot 2 dimensional categorical data as...
get.colony.data: This function creates a data object from the Colony2 outputs.
get.interm.data: A function to collect intermediate data produced by Colony2...
get.parentage: A function to extract the paternity and maternity information...
monitor.colony: A function to monitor the intermediate results of the...
plotsibs: A function to plot sibships (full and half-sibs) in an x-y...
rcolony-package: Tools for implementation and visualisation of Colony and its...
run.colony: A function to run Colony2 from within the R environment.
testdata: Example dataset for the rcolony package

Functions

build.colony.input Man page Source code
categoricalxy Man page
get.colony.data Man page Source code
get.interm.data Man page Source code
get.parentage Man page
monitor.colony Man page Source code
plotsibs Man page
rcolony Man page
rcolony-package Man page
run.colony Man page Source code
testdata Man page

Files

DESCRIPTION
NAMESPACE
R
R/build.colony.input.R
R/categoricalxy.R
R/get.colony.data.R
R/get.interm.data.R
R/get.parentage.R
R/monitor.colony.R
R/plotsibs.R
R/run.colony.R
data
data/testdata.rda
man
man/build.colony.input.Rd
man/categoricalxy.Rd
man/get.colony.data.Rd
man/get.interm.data.Rd
man/get.parentage.Rd
man/monitor.colony.Rd
man/plotsibs.Rd
man/rcolony-package.Rd
man/run.colony.Rd
man/testdata.Rd
rcolony documentation built on May 21, 2017, 3:58 a.m.

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