get.parentage: A function to extract the paternity and maternity information...
In rcolony: Tools for implementation and visualisation of Colony2 and its outputs.
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
This function extracts the paternity and maternity information from a colony object that was created using get.colony.data.
The output is a dataframe with 3 columns. (1) mums, (2) dads, (3) frequency.
The output can either be derived from pairwise-likelihood or the full-likelihood method (if available).
Usage
1
get.parentage(colony.object, pairwise = FALSE)
Arguments
colony.object
A list created by get.colony.data
.
pairwise
Should the parentage information be derived from the pairwise likelihood estimates (TRUE), of from the full likelihood methods (FALSE). See Wang et al. for details.
Value
A data frame with 3 columns. (1) mums, (2) dads, (3) frequency.
Author(s)
Owen R. Jones
References
Wang, J. (2004) Sibship reconstruction from genetic data with typing errors. Genetics 166: 1963-1979.
See Also
Examples
1
2
3
data(testdata)
parents<-get.parentage(testdata)
head(parents)
rcolony documentation built on May 2, 2019, 6:42 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
This function extracts the paternity and maternity information from a colony object that was created using get.colony.data.
The output is a dataframe with 3 columns. (1) mums, (2) dads, (3) frequency.
The output can either be derived from pairwise-likelihood or the full-likelihood method (if available).
Usage
1 | get.parentage(colony.object, pairwise = FALSE)
|
Arguments
colony.object |
A list created by |
.
pairwise |
Should the parentage information be derived from the pairwise likelihood estimates (TRUE), of from the full likelihood methods (FALSE). See Wang et al. for details. |
Value
A data frame with 3 columns. (1) mums, (2) dads, (3) frequency.
Author(s)
Owen R. Jones
References
Wang, J. (2004) Sibship reconstruction from genetic data with typing errors. Genetics 166: 1963-1979.
See Also
Examples
1 2 3 | data(testdata)
parents<-get.parentage(testdata)
head(parents)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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