replicationgraph: Replication graph

In replicationgraph: Replication graph

Description

Visualise multiple-table replication structure as a bipartite graph.

Usage

  replicationgraph(replicationmatrix, dimensionnames,
    variablenames, min.interbox = 0.01, edgespace = 0.3,
    boxheight = 1/(max(dim(replicationmatrix)) - (1 - min.interbox)),
    cex = 1, lwd = 1)

Arguments

replicationmatrix	A binary matrix with rows and columns representing dimensions of replication and variables respectively.
dimensionnames	Optional character vector giving names for the dimensions of replication. If missing, the rownames of replicationmatrix are used.
variablenames	Optional character vector giving names for the variables. If missing, the colnames of replicationmatrix are used.
min.interbox	Minimum inter-box distance.
edgespace	Number between 0 and 1 giving the width of the space for the edges of the graph.
boxheight	Number greater than zero giving the height of the boxes representing the nodes of the graph. Numbers that are too large to fit in the plot region will be automatically reduced.
cex	Text size.
lwd	Edge width.

Examples

s <- matrix(c(1, 1), 2, 1, byrow = TRUE, dimnames = list(c('sites',
 'species'), c('abundance')))
replicationgraph(s)
s <- matrix(c(1, 1, 0, 1), 2, 2, byrow = TRUE, dimnames = list(c('sites',
 'species'), c('envrnmnt', 'abundance')))
replicationgraph(s)
s <- matrix(c(1, 1, 0, 0, 1, 1), 2, 3, byrow = TRUE, dimnames = list(c('sites', '
 species'), c('envrnmnt', 'abundance', 'traits')))
replicationgraph(s)
s <- matrix(c(1, 1, 1, 0, 1, 1), 2, 3, byrow = TRUE, dimnames = list(c('sites',
 'species'), c('envrnmnt', 'abundance', 'traits')))
replicationgraph(s)
replicationgraph(s, lwd = 10)
replicationgraph(s, cex = 3)
replicationgraph(s, edgespace = 0.1)
replicationgraph(s, boxheight = 0)
replicationgraph(s,
 variablenames = c('envrnmntl\nvrbls','species\nabdncs','species\ntraits'))

replicationgraph documentation built on May 2, 2019, 5:25 p.m.