season: Seasonal analysis of health data

Routines for the seasonal analysis of health data, including regression models, time-stratified case-crossover, plotting functions and residual checks. Thanks to Yuming Guo for checking the case-crossover code.

AuthorAdrian Barnett <a.barnett@qut.edu.au>, Peter Baker <p.baker1@uq.edu.au>
Date of publication2012-08-03 10:34:30
MaintainerAdrian Barnett <a.barnett@qut.edu.au>
LicenseGPL (>= 3)
Version0.3-2

View on R-Forge

Man pages

aaft: Amplitude Adjusted Fourier Transform (AAFT)

AFL: Australian Football League (AFL) players' birthdays for the...

casecross: Case-crossover analysis to control for seasonality

ciPhase: Mean and confidence interval for circular phase

cipolygon-internal: Function to draw CI polygon

cosinor: Cosinor regression model for detecting seasonality

createAdj: Creates an adjacency matrix

CVD: Cardiovascular deaths in Los Angeles, 1987-2000

CVDdaily: Daily cardiovascular deaths in Los Angeles, 1987-2000

exercise: Exercise data from Queensland, 2005-2007

flagleap-internal: Count the number of days in the month

invyrfraction: Inverse fraction of the year

kalfil-internal: Forward and backward sweep of the Kalman filter

monthglm: Fit a GLM with month

monthmean: Monthly means

nochars-internal: Remove letters and characters from a string

nonlintest: Test of non-linearity of a time series

nscosinor: Non-stationary cosinor

nscosinor.initial-internal: Initial values for non-stationary cosinor. For internal use...

peri: Periodogram

phasecalc: Phase from cosinor estimates

plotCircle: Circular plot

plotCircular: Circular plot using segments

plot.Cosinor: Plot the results of a cosinor

plotMonth: Plot results by month

plot.monthglm: Plot of monthly estimates

plot.nonlintest: Plot the results of the non-linear test

plot.nsCosinor: Plot the results of a Non-stationary cosinor

print.casecross: Print the results of a case-crossover model

print.Cosinor: Print the results of a cosinor

print.Monthmean: Print the results from monthmean

print.nonlintest: Print the results of the non-linear test

print.nsCosinor: Print the results of a Non-stationary cosinor

rinvgamma-internal: Random inverse gamma distribution

schz: Schizophrenia births in Australia, 1930-1971

season-internal: Internal Season Functions

season-package: Tools for uncovering and estimating seasonal patterns.

seasrescheck: Seasonal residual checks

sinusoid: Plot a sinusoid

stillbirth: Stillbirths in Queensland, 1998-2000

summary.casecross: Summary of the results of a case-crossover model

summary.Cosinor: Summary for a cosinor

summary.monthglm: Summary for a monthglm

summary.nsCosinor: Summary for a Non-stationary cosinor

third: Third-order moment

wtest: Walter and Elwood's test of seasonality

yrfraction: Fraction of the year

Files in this package

season
season/data
season/data/CVD.RData
season/data/exercise.RData
season/data/schz.RData
season/data/CVDdaily.RData
season/data/stillbirth.RData
season/data/AFL.RData
season/R
season/R/plot.nsCosinor.R season/R/plotCircular.R season/R/flagleap.R season/R/casecross.R
season/R/aaft.R
season/R/third.R season/R/createAdj.R season/R/seasrescheck.R season/R/print.Cosinor.R season/R/summary.nsCosinor.R season/R/plotCircle.R season/R/nscosinor.R season/R/print.summary.nsCosinor.R season/R/print.nonlintest.R season/R/summary.casecross.R season/R/yrfraction.R season/R/print.summary.Cosinor.R season/R/peri.R season/R/kalfil.R season/R/plot.Cosinor.R
season/R/invyrfraction.R
season/R/wtest.R season/R/print.Monthmean.R season/R/plot.nonlintest.R season/R/summary.Cosinor.R
season/R/nonlintest.R
season/R/ciPhase.R season/R/print.nsCosinor.R season/R/rinvgamma.R season/R/phasecalc.R season/R/monthmean.R season/R/monthglm.R season/R/nscosinor.initial.R season/R/cipolygon.R season/R/nochars.R season/R/plotMonth.R season/R/sinusoid.R season/R/summary.monthglm.R season/R/cosinor.R season/R/print.casecross.R season/R/print.summary.monthglm.R season/R/plot.Monthmean.R season/R/plot.monthglm.R season/R/print.monthglm.R
season/NAMESPACE
season/inst
season/inst/CITATION
season/DESCRIPTION
season/man
season/man/print.nsCosinor.Rd season/man/plot.monthglm.Rd season/man/monthglm.Rd season/man/print.nonlintest.Rd season/man/stillbirth.Rd season/man/seasrescheck.Rd season/man/phasecalc.Rd season/man/season-internal.Rd season/man/third.Rd season/man/print.Monthmean.Rd season/man/print.Cosinor.Rd season/man/CVD.Rd season/man/wtest.Rd season/man/plotMonth.Rd season/man/nonlintest.Rd season/man/invyrfraction.Rd season/man/cosinor.Rd season/man/yrfraction.Rd season/man/monthmean.Rd season/man/ciPhase.Rd season/man/cipolygon-internal.Rd season/man/summary.Cosinor.Rd season/man/casecross.Rd season/man/summary.casecross.Rd season/man/plotCircular.Rd season/man/flagleap-internal.Rd season/man/print.casecross.Rd season/man/peri.Rd season/man/rinvgamma-internal.Rd season/man/sinusoid.Rd season/man/createAdj.Rd season/man/kalfil-internal.Rd season/man/plotCircle.Rd season/man/summary.monthglm.Rd season/man/nscosinor.Rd season/man/nscosinor.initial-internal.Rd season/man/AFL.Rd season/man/schz.Rd season/man/exercise.Rd season/man/season-package.Rd season/man/aaft.Rd season/man/CVDdaily.Rd season/man/plot.nonlintest.Rd season/man/nochars-internal.Rd season/man/summary.nsCosinor.Rd season/man/plot.Cosinor.Rd season/man/plot.nsCosinor.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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