sharpr2-package: Estimating regularoty scores and identifying high resolution...

In sharpr2: Estimating Regulatory Scores and Identifying ATAC-STARR Data

Description

The package develops an algorithm for identifying high-resolution driver elements for datasets from an ATAC-STARR library.

Details

Package:	sharpr2
Type:	Package
Version:	1.1.1.0000
Date:	2018-05-12
License:	GPL

Author(s)

Liang He

Maintainer: Liang He <[e-mail]>

References

High-resolution genome-wide functional dissection of transcriptional regulatory regions in human. Xinchen Wang, Liang He, Sarah Goggin, Alham Saadat, Li Wang, Melina Claussnitzer, Manolis Kellis. bioRxiv 193136; doi: https://doi.org/10.1101/193136

Examples

data(hidra_ex)
re <- sharpr2(hidra_ex[1:2000,], l_min = 150, l_max = 600, f_dna = 5, f_rna = 0, sig=FALSE)

sharpr2 documentation built on May 2, 2019, 6:47 p.m.