sjemea: Multi electrode analysis
Version 0.33

Description: Multi-electrode analysis (St Louis, Sanger, Ncl, IIT)

AuthorStephen Eglen <sje30@cam.ac.uk>
Date of publication2012-04-27 13:39:27
MaintainerStephen Eglen <sje30@cam.ac.uk>
LicenseGPL (>= 2)
Version0.33
URL http://www.damtp.cam.ac.uk/user/sje30/r
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sjemea", repos="http://R-Forge.R-project.org")

Popular man pages

bursts: Burst detection of MEA spike trains.
feller.read.spikes: Read in a directory of spike times from Marla Feller and...
hist.ab: Histogram routines to help compute the cross-correlation...
jay.read.spikes: Read in the .txt file from Neuroexplorer and create a...
litke.read.spikes: Read in the .mat file containing MEA data from Alan Litke
networkspikes: Compute network spikes
sjemea-internal: Internal sjemea functions
See all...

All man pages Function index File listing

Man pages

bursts: Burst detection of MEA spike trains.
feller.read.spikes: Read in a directory of spike times from Marla Feller and...
hist.ab: Histogram routines to help compute the cross-correlation...
jay.read.spikes: Read in the .txt file from Neuroexplorer and create a...
litke1layout: Layout of the MEA provided by Alan Litke, as used in the 2009...
litke.read.spikes: Read in the .mat file containing MEA data from Alan Litke
networkspikes: Compute network spikes
sanger.read.spikes: Read in a nexTimestamps file from Neuroexplorer and create a...
sjemea-internal: Internal sjemea functions

Functions

ast.lib Source code
basenamepy Source code
bci Source code
bin.distances Source code
burstinfo Source code
burstmatrix.to.episode Source code
bursts.to.active Source code
calc.all.ibi Source code
calc.all.isi Source code
calc.burst.summary Source code
calc.ibi Source code
centre.of.mass Source code
centre.of.mass.wt Source code
centre.of.mass.wt2 Source code
check.ns.plot Source code
check.pks Source code
check.similarity Source code
check.spikes.monotonic Source code
clean.args Source code
colour.com Source code
compute.ns Man page Source code
corr.check.fit Source code
corr.do.fit Source code
corr.get.means Source code
corr.get.means.check Source code
corr.get.means.old Source code
corr.get.means.old2 Source code
corr.index Source code
count.nab Man page Source code
crosscorrplots Source code
cv.isi Source code
draw.spikes Source code
ejcmealayout.check Source code
episode.detection Source code
extract.burst.times.with.id Source code
fano Source code
fano.allspikes Source code
fano.array Source code
fano.plot Source code
feller.read.spikes Man page Source code
feller.spiketimes Source code
file.or.gz Source code
filter.channel.names Source code
find.burst Source code
find.halfmax Source code
find.halfmax.cute Source code
find.peaks Source code
findEpisodes Source code
fourplot Source code
handle.gz Source code
hist.ab Man page Source code
hist.make.labels Source code
histbi.ab Man page Source code
iit.read.spikes Man page Source code
isi Source code
jay.filter.for.max Man page Source code
jay.filter.for.min Man page Source code
jay.filter.for.na Man page Source code
jay.read.spikes Man page Source code
list.to.data.frame Source code
litke.keep.spikes Source code
litke.read.spikes Man page Source code
litke.spiketimes Source code
litke1layout Man page
locpeaks Source code
logisi.compute Source code
logisi.find.burst Source code
make.animated.gif Source code
make.corr.indexes Source code
make.corr.indexes2 Source code
make.distances Source code
make.distances.check Source code
make.distances.old Source code
make.ejc.layout Source code
make.ejcmealayout Source code
make.iit.layout Source code
make.jay.layout Source code
make.litke1.layout Source code
make.meafile.cache Source code
make.mi Source code
make.movieframes Source code
make.sanger1.layout Source code
make.spikes.to.frate Source code
make.spikes.to.frate.old Source code
make.sql.file Source code
make.sun.layout Source code
make.sun.layout.old Source code
mat.rda.name Source code
mat.to.rda Source code
mat.to.rda.dir Source code
mcd.data.to.array Source code
mea.op Source code
meafile Source code
mean.burst.summary Source code
mean.ns Source code
meatable Source code
med64.spike.reader Source code
mi.find.bursts Source code
mm.readpos Source code
mm.readpos.compare Source code
movie.postage Source code
movie.window Source code
my.log2 Source code
my.lower Source code
my.upper Man page Source code
names.to.indexes Source code
ncl.read.spikes Source code
ns.bin.peak Source code
ns.coincident Source code
ns.identity Source code
num.bursts Source code
oneoff.make.litke1.layout Source code
op.picture Source code
peaks Source code
peaksign Source code
plot.bci Source code
plot.burst.info Source code
plot.corr.index Source code
plot.corr.index.fit Source code
plot.cumisi Source code
plot.mealayout Source code
plot.mealayout.1 Source code
plot.mealayout.hi Source code
plot.meanfiringrate Source code
plot.mm.pos Source code
plot.mm.s Source code
plot.mscom Source code
plot.ns Source code
plot.rate.mslayout Source code
plot.rate.mslayout.col Source code
plot.rate.mslayout.old Source code
plot.rate.mslayout.rad Source code
plot.rate.mslayout.scale Source code
plot.spikes Source code
plotCI Source code
print.mm.s Source code
printf Source code
prob.r Source code
prob.t Source code
prob.t.cond.r Source code
rates.to.cols Source code
rates.to.radii Source code
rates.to.radii.prop.area Source code
rates.to.radii.prop.rad Source code
read.cond.tab Source code
read.ms.mm.data Source code
read.ms.mm.data.format1 Man page Source code
read.ms.mm.data.format2 Man page Source code
read.spikes Man page Source code
readMatRda Source code
remove.empty.channels Source code
rs.find.bursts Source code
sanger.init Source code
sanger.read.spikes Man page Source code
sanger.write.corrs Source code
show.litke.layout Source code
show.movie Source code
show.ns Man page Source code
show.prob.t.r Source code
shuffle.spike.times Source code
si.find.burst2 Source code
si.find.bursts Source code
spikes.to.bursts Man page Source code Source code
spikes.to.bursts.surprise Man page Source code
spikes.to.count2 Source code
spikes.to.ragged.csv Source code
spikeview Source code
sql.read.spikes Source code
sql.spike.reader Source code
summary.mm.s Source code
summary.ns Source code
sun.read.spikes Source code
sun2.read.spikes Source code
surprise Source code
test.count.hist.nab Man page Source code
test.count.hist2.nab Man page Source code
test.hist.ab Man page Source code
test.histograms.versus.r Man page Source code
time.to.frame Source code
val2rk Source code
write.corr.indexes Source code
xcorr.plot Source code
xcorr.restricted Source code

Files

data
data/litke1layout.txt.xz
data/ejcmealayout.txt.bz2
data/ejc_layout.txt.bz2
data/mmpos.rda
R
R/peaks.R
R/med.R
R/general.R
R/iit.R
R/ms_funs.r
R/findEpisodes.R
R/sanger.R
R/maxinterval.R
R/bci.R
R/ranksurprise.R
R/logisi.R
R/ncl_mea.R
R/zzz.R
R/episode.detection.R
R/litke.R
R/feller.R
R/surprise2.R
R/corr_index.R
R/networkspikes.R
R/basenamepy.R
R/sun.R
R/sql.R
R/mm_mea.R
NAMESPACE
inst
inst/examples
inst/examples/2002-11-26-1
inst/examples/2002-11-26-1/2002.11.26 R2 a4a
inst/examples/2002-11-26-1/2002.11.26 R2 h2a
inst/examples/2002-11-26-1/2002.11.26 R2 h8a
inst/examples/2002-11-26-1/2002.11.26 R2 c3a
inst/examples/2002-11-26-1/2002.11.26 R2 f1a
inst/examples/2002-11-26-1/2002.11.26 R2 b1a
inst/examples/2002-11-26-1/2002.11.26 R2 g2a
inst/examples/2002-11-26-1/2002.11.26 R2 b2a
inst/examples/2002-11-26-1/2002.11.26 R2 b3a
inst/examples/2002-11-26-1/2002.11.26 R2 c2a
inst/examples/2002-11-26-1/2002.11.26 R2 c6a
inst/examples/2002-11-26-1/2002.11.26 R2 e6a
inst/examples/2002-11-26-1/2002.11.26 R2 a7a
inst/examples/2002-11-26-1/2002.11.26 R2 a5a
inst/examples/2002-11-26-1/2002.11.26 R2 g3a
inst/examples/2002-11-26-1/2002.11.26 R2 b5a
inst/examples/INDEX
inst/examples/ejc_ElectrodeNumbering.jpg
inst/examples/P9_CTRL_MY1_1A.txt
inst/examples/fourplot.png
inst/examples/TC89_DIV15_A.nexTimestamps
inst/extdata
inst/extdata/Electrode_Map.mat
TODO.org
DESCRIPTION
ChangeLog
man
man/feller.read.spikes.Rd
man/sjemea-internal.Rd
man/litke.read.spikes.Rd
man/hist.ab.Rd
man/sanger.read.spikes.Rd
man/jay.read.spikes.Rd
man/bursts.Rd
man/litke1layout.Rd
man/networkspikes.Rd
src
src/sjemea.c
sjemea documentation built on May 21, 2017, 1:33 a.m.

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