Description Usage Arguments Value Examples
For a set of spike trains in an MEA recording, find the bursts independently within each spike train.
1 | spikes.to.bursts(s, method="si")
|
s |
MEA data structure |
method |
A string, either "si" (surprise method), "mi" (maxinterval), "logisi" (Log ISI histogram). |
Return the "all bursts" data structure. This is a list of matrices, giving the burst information for each electrode.
Each matrix stores basic information about each burst. There is one row for every burst, with the following columns:
beg | index of the first spike in the burst |
len | number of spikes in this burst |
SI | surprise index (calculated only for the surprise method) |
durn | duration (in s) of the burst |
mean.isis | mean of all interspike intervals. |
If no bursts could be found within a spike train, the value NA is used rather than an empty matrix.
1 2 3 4 5 | data.file <- system.file("examples", "TC89_DIV15_A.nexTimestamps",
package = "sjemea")
s <- sanger.read.spikes(data.file)
s$allb <- spikes.to.bursts.surprise(s)
if (interactive()) spikeview(s)
|
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