soilDB
Soil Database Interface

Package index
Search the soilDB package
Vignettes
Functions
52
Source code
36
Man pages
31
Home
/
R-Forge
/
soilDB
/
loafercreek: LoaferCreek Soils

loafercreek: LoaferCreek Soils
In soilDB: Soil Database Interface

Description Usage Format Examples

Description

A SoilProfileCollection Object of Loafercreek Soils from the CA630 Soil Survey Area.

Usage

1
data(loafercreek)

Format

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
Formal class 'SoilProfileCollection' [package "aqp"] with 7 slots
  ..@ idcol     : chr "pedon_id"
  ..@ depthcols : chr [1:2] "hzdept" "hzdepb"
  ..@ metadata  :'data.frame':	1 obs. of  1 variable:
  .. ..$ depth_units: chr "cm"
  ..@ horizons  :'data.frame':	308 obs. of  29 variables:
  .. ..$ phiid          : int [1:308] 1258320 1258321 1258322 1258323 1258324 1258325 2068689 2068690 2068691 2068692 ...
  .. ..$ pedon_id       : chr [1:308] "07SKC003" "07SKC003" "07SKC003" "07SKC003" ...
  .. ..$ hzname         : chr [1:308] "A" "Bt1" "Bt2" "2Bt3" ...
  .. ..$ hzdept         : int [1:308] 0 10 23 33 48 64 0 1 4 12 ...
  .. ..$ hzdepb         : int [1:308] 10 23 33 48 64 64 1 4 12 28 ...
  .. ..$ clay           : num [1:308] 15 19 32 38 28 NA NA 16 18 25 ...
  .. ..$ silt           : num [1:308] 50 61 55 49 NA NA NA NA NA NA ...
  .. ..$ sand           : num [1:308] 35 20 13 13 NA NA NA NA NA NA ...
  .. ..$ texture_class  : chr [1:308] "l" "sil" "sicl" "sicl" ...
  .. ..$ phfield        : num [1:308] 6.8 6.7 6.9 6.9 6.7 ...
  .. ..$ effervescence  : chr [1:308] NA NA NA NA ...
  .. ..$ labsampnum     : chr [1:308] NA NA NA NA ...
  .. ..$ total_frags_pct: int [1:308] 10 24 5 10 23 0 0 10 10 18 ...
  .. ..$ d_r            : num [1:308] 0.525 0.637 0.541 0.525 0.616 ...
  .. ..$ d_g            : num [1:308] 0.34 0.441 0.331 0.34 0.452 ...
  .. ..$ d_b            : num [1:308] 0.158 0.248 0.185 0.158 0.218 ...
  .. ..$ m_r            : num [1:308] 0.399 0.525 0.541 0.525 0.525 ...
  .. ..$ m_g            : num [1:308] 0.251 0.34 0.331 0.34 0.34 ...
  .. ..$ m_b            : num [1:308] 0.113 0.158 0.185 0.158 0.158 ...
  .. ..$ taxon_kind     : chr [1:308] "series" "series" "series" "series" ...
  .. ..$ soil_color     : chr [1:308] "#66401D" "#865728" "#8A542F" "#865728" ...
  .. ..$ gravel         : num [1:308] 10 16 5 10 0 NA NA 10 10 18 ...
  .. ..$ paragravel     : num [1:308] 0 0 0 0 18 NA NA 0 0 0 ...
  .. ..$ cobbles        : num [1:308] 0 0 0 0 0 NA NA 0 0 0 ...
  .. ..$ paracobbles    : num [1:308] 0 8 0 0 5 NA NA 0 0 0 ...
  .. ..$ stones         : num [1:308] 0 0 0 0 0 NA NA 0 0 0 ...
  .. ..$ boulders       : num [1:308] 0 0 0 0 0 NA NA 0 0 0 ...
  .. ..$ channers       : num [1:308] 0 0 0 0 0 NA NA 0 0 0 ...
  .. ..$ flagstones     : num [1:308] 0 0 0 0 0 NA NA 0 0 0 ...
  ..@ site      :'data.frame':	52 obs. of  46 variables:
  .. ..$ pedon_id                              : chr [1:52] "07SKC003" "09BAH008" "09CKS001" "09CKS006" ...
  .. ..$ peiid                                 : int [1:52] 268820 493742 342445 374201 374205 374216 374219 374232 542131 530603 ...
  .. ..$ site_id                               : chr [1:52] "07CA630SKC003" "09CA630BAH008" "09CA630CKS001" "09CA630CKS006" ...
  .. ..$ siteiid                               : int [1:52] 269617 501286 342696 374485 374489 374500 374503 374516 550825 540897 ...
  .. ..$ sampled_as                            : chr [1:52] "Motherlode" "Loafercreek" "Loafercreek active" "Loafercreek" ...
  .. ..$ correlated_as                         : chr [1:52] "LOAFERCREEK" "Loafercreek" "Loafercreek" "Loafercreek" ...
  .. ..$ hillslope_pos                         : chr [1:52] "Backslope" "Footslope" "Backslope" "Backslope" ...
  .. ..$ datum                                 : chr [1:52] "NAD83" "NAD83" "NAD83" "NAD83" ...
  .. ..$ elev                                  : num [1:52] 328 384 1014 210 202 ...
  .. ..$ slope                                 : num [1:52] 9 3 22 29 4 36 50 18 22 32 ...
  .. ..$ aspect                                : int [1:52] 344 102 220 235 115 185 185 335 45 52 ...
  .. ..$ plantassocnm                          : chr [1:52] "Blue Oak Woodland" "Blue Oak Woodland/Grassland" "Blue Oak Woodland" "Blue Oak Woodlland" ...
  .. ..$ bedrckdepth                           : int [1:52] 64 68 110 86 96 72 93 65 72 70 ...
  .. ..$ bedrock_kind                          : chr [1:52] "Greenstone" "Metavolcanics" "Greenstone" "Greenstone" ...
  .. ..$ bedrock_hardness                      : chr [1:52] NA "Noncemented" NA NA ...
  .. ..$ describer                             : chr [1:52] "Stacy Kavanaugh" "Bev Harben" "Chris Savastio" "Chris Savastio" ...
  .. ..$ psctopdepth                           : int [1:52] 23 12 9 3 2 12 8 5 6 25 ...
  .. ..$ pscbotdepth                           : int [1:52] 64 62 59 53 52 57 58 55 56 70 ...
  .. ..$ part_size_class                       : chr [1:52] "fine-loamy" "fine-loamy" "fine-loamy" "fine-loamy" ...
  .. ..$ tax_subgroup                          : chr [1:52] "Ultic Haploxeralfs" "Ultic Haploxeralfs" "Ultic Haploxeralfs" "Ultic Haploxeralfs" ...
  .. ..$ obs_date                              : POSIXct[1:52], format: "2007-03-21" "2009-06-03" "2009-03-23" ...
  .. ..$ pedon_purpose                         : chr [1:52] "full pedon description" "full pedon description" "full pedon description" NA ...
  .. ..$ pedon_type                            : chr [1:52] "within range of series" "within range of series" "modal pedon for series" "within range of series" ...
  .. ..$ pedlabsampnum                         : chr [1:52] NA NA "S09CA009002" NA ...
  .. ..$ ochric.epipedon                       : logi [1:52] TRUE TRUE TRUE TRUE TRUE TRUE ...
  .. ..$ cambic.horizon                        : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ paralithic.contact                    : logi [1:52] TRUE TRUE TRUE TRUE TRUE TRUE ...
  .. ..$ lithic.contact                        : logi [1:52] FALSE FALSE TRUE FALSE FALSE FALSE ...
  .. ..$ mollic.epipedon                       : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ argillic.horizon                      : logi [1:52] TRUE TRUE TRUE TRUE TRUE TRUE ...
  .. ..$ umbric.epipedon                       : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ paralithic.materials                  : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ lithologic.discontinuity              : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ andic.soil.properties                 : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ densic.contact                        : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ aquic.conditions                      : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ duripan                               : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ slickensides                          : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ kandic.horizon                        : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ redox.depletions.with.chroma.2.or.less: logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ reduced.matrix                        : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ abrupt.textural.change                : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ calcic.horizon                        : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ redox.concentrations                  : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ limnic.material                       : logi [1:52] FALSE FALSE FALSE FALSE FALSE FALSE ...
  .. ..$ musym                                 : chr [1:52] "7086" "7085" "7086" "7086" ...
  ..@ sp        :Formal class 'SpatialPoints' [package "sp"] with 3 slots
  .. .. ..@ coords     : num [1:52, 1:2] 723623 716141 713132 712414 712479 ...
  .. .. .. ..- attr(*, "dimnames")=List of 2
  .. .. .. .. ..$ : chr [1:52] "248" "406" "495" "500" ...
  .. .. .. .. ..$ : chr [1:2] "x" "y"
  .. .. ..@ bbox       : num [1:2, 1:2] 694821 4179313 729963 4233623
  .. .. .. ..- attr(*, "dimnames")=List of 2
  .. .. .. .. ..$ : chr [1:2] "x" "y"
  .. .. .. .. ..$ : chr [1:2] "min" "max"
  .. .. ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slots
  .. .. .. .. ..@ projargs: chr " +proj=utm +zone=10 +ellps=GRS80 +datum=NAD83 +units=m +no_defs +towgs84=0,0,0"
  ..@ diagnostic:'data.frame':	170 obs. of  8 variables:
  .. ..$ pedon_id     : chr [1:170] "07SKC003" "07SKC003" "07SKC003" "09BAH008" ...
  .. ..$ peiid        : int [1:170] 268820 268820 268820 493742 493742 493742 342445 342445 342445 342445 ...
  .. ..$ musym        : chr [1:170] "7086" "7086" "7086" "7085" ...
  .. ..$ correlated_as: chr [1:170] "LOAFERCREEK" "LOAFERCREEK" "LOAFERCREEK" "Loafercreek" ...
  .. ..$ pedon_id     : chr [1:170] "07SKC003" "07SKC003" "07SKC003" "09BAH008" ...
  .. ..$ diag_kind    : chr [1:170] "ochric epipedon" "argillic horizon" "paralithic contact" "ochric epipedon" ...
  .. ..$ featdept     : int [1:170] 0 23 64 1 12 68 0 9 97 110 ...
  .. ..$ featdepb     : int [1:170] 23 64 NA 12 68 100 9 97 110 NA ...

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
## Not run: 
# load example dataset
data(gopheridge)

# what kind of object is this?
class(gopheridge)

# tighten figure margins:
par(mar=c(0,0,4,0))

# plot soil colors
plot(gopheridge, name='hzname', color='soil_color')

# generate colors based on clay content
plot(gopheridge, name='hzname', color='clay')

# plot soils sorted by depth to contact
plot(gopheridge, name='hzname', plot.order=order(gopheridge$bedrckdepth))

# plot first 10 profiles
plot(gopheridge[1:10, ], name='hzname', color='soil_color')

# add rock fragment data to plot:
addVolumeFraction(gopheridge[1:10, ], colname='total_frags_pct')

# add diagnostic horizons
addDiagnosticBracket(gopheridge[1:10, ], kind='argillic horizon', col='red')

## End(Not run)

Example output

Loading required package: aqp
This is aqp 1.10
[1] "SoilProfileCollection"
attr(,"package")
[1] "aqp"

soilDB documentation built on May 2, 2019, 5:17 p.m.

Related to loafercreek in soilDB...

soilDB index
Package overview

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close