spdep: Spatial Dependence: Weighting Schemes, Statistics and Models

A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.

AuthorRoger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Abhirup Mallik [ctb, trl], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Date of publication2017-01-08 19:59:48
MaintainerRoger Bivand <Roger.Bivand@nhh.no>
LicenseGPL (>= 2)
Version0.6-9
https://r-forge.r-project.org/projects/spdep/

View on R-Forge

Man pages

afcon: Spatial patterns of conflict in Africa 1966-78

aggregate.nb: Aggregate a spatial neighbours object

airdist: Measure distance from plot

anova.sarlm: Comparison of simultaneous autoregressive models

aple: Approximate profile-likelihood estimator (APLE)

aple.mc: Approximate profile-likelihood estimator (APLE) permutation...

aple.plot: Approximate profile-likelihood estimator (APLE) scatterplot

as_dgRMatrix_listw: Interface between Matrix class objects and weights lists

auckland: Marshall's infant mortality in Auckland dataset

autocov_dist: Distance-weighted autocovariate

baltimore: House sales prices, Baltimore, MD 1978

bhicv: Data set with 4 life condition indices of Belo Horizonte...

boston: Corrected Boston Housing Data

bptest.sarlm: Breusch-Pagan test for spatial models

card: Cardinalities for neighbours lists

cell2nb: Generate neighbours list for grid cells

choynowski: Choynowski probability map values

COL.OLD: Columbus OH spatial analysis data set - old numbering

columbus: Columbus OH spatial analysis data set

compon: Depth First Search on Neighbor Lists

diffnb: Differences between neighbours lists

dnearneigh: Neighbourhood contiguity by distance

do_ldet: Spatial regression model Jacobian computations

droplinks: Drop links in a neighbours list

EBest: Global Empirical Bayes estimator

EBImoran.mc: Permutation test for empirical Bayes index

EBlocal: Local Empirical Bayes estimator

edit.nb: Interactive editing of neighbours lists

eigenw: Spatial weights matrix eigenvalues

eire: Eire data sets

elect80: 1980 Presidential election results

errorsarlm: Spatial simultaneous autoregressive error model estimation

geary: Compute Geary's C

geary.mc: Permutation test for Geary's C statistic

geary.test: Geary's C test for spatial autocorrelation

getisord: Getis-Ord remote sensing example data

globalG.test: Global G test for spatial autocorrelation

GMerrorsar: Spatial simultaneous autoregressive error model estimation by...

graphneigh: Graph based spatial weights

gstsls: Spatial simultaneous autoregressive SAC model estimation by...

hopkins: Hopkins burnt savanna herb remains

house: Lucas county OH housing

huddersfield: Prevalence of respiratory symptoms

impacts.sarlm: Impacts in spatial lag models

include.self: Include self in neighbours list

invIrM: Compute SAR generating operator

joincount.mc: Permutation test for same colour join count statistics

joincount.multi: BB, BW and Jtot join count statistic for k-coloured factors

joincount.test: BB join count statistic for k-coloured factors

knearneigh: K nearest neighbours for spatial weights

knn2nb: Neighbours list from knn object

lag.listw: Spatial lag of a numeric vector

lagmess: Matrix exponential spatial lag model

lagsarlm: Spatial simultaneous autoregressive lag model estimation

lee: Compute Lee's statistic

lee.mc: Permutation test for Lee's L statistic

lee.test: Lee's L test for spatial autocorrelation

lextrB: Find extreme eigenvalues of binary symmetric spatial weights

listw2sn: Spatial neighbour sparse representation

lm.LMtests: Lagrange Multiplier diagnostics for spatial dependence in...

lm.morantest: Moran's I test for residual spatial autocorrelation

lm.morantest.exact: Exact global Moran's I test

lm.morantest.sad: Saddlepoint approximation of global Moran's I test

localG: G and Gstar local spatial statistics

localmoran: Local Moran's I statistic

localmoran.exact: Exact local Moran's Ii tests

localmoran.sad: Saddlepoint approximation of local Moran's Ii tests

LR.sarlm: Likelihood ratio test

mat2listw: Convert a square spatial weights matrix to a weights list...

MCMCsamp: MCMC sample from fitted spatial regression

ME: Moran eigenvector GLM filtering

moran: Compute Moran's I

moran.mc: Permutation test for Moran's I statistic

moran.plot: Moran scatterplot

moran.test: Moran's I test for spatial autocorrelation

mstree: Find the minimal spanning tree

nb2blocknb: Block up neighbour list for location-less observations

nb2INLA: Output spatial neighbours for INLA

nb2lines: Use arc-type shapefiles for import and export of weights

nb2listw: Spatial weights for neighbours lists

nb2mat: Spatial weights matrices for neighbours lists

nb2WB: Output spatial weights for WinBUGS

nbcosts: Compute cost of edges

nbdists: Spatial link distance measures

nblag: Higher order neighbours lists

nboperations: Set operations on neighborhood objects

nc.sids: North Carolina SIDS data

NY_data: New York leukemia data

p.adjustSP: Adjust local association measures' p-values

plot.mst: Plot the Minimum Spanning Tree

plot.nb: Plot a neighbours list

plot.skater: Plot the object of skater class

poly2nb: Construct neighbours list from polygon list

predict.sarlm: Prediction for spatial simultaneous autoregressive linear...

probmap: Probability mapping for rates

prunecost: Compute cost of prune each edge

prunemst: Prune a Minimun Spanning Tree

read.gal: Read a GAL lattice file into a neighbours list

read.gwt2nb: Read and write spatial neighbour files

residuals.sarlm: Access functions for spatial simultaneous autoregressive...

rotation: Rotate a set of point by a certain angle

sacsarlm: Spatial simultaneous autoregressive SAC model estimation

set.mcOption: Options for parallel support

set.spChkOption: Control checking of spatial object IDs

similar.listw: Create symmetric similar weights lists

skater: Spatial 'K'luster Analysis by Tree Edge Removal

SpatialFiltering: Semi-parametric spatial filtering

spautolm: Spatial conditional and simultaneous autoregression model...

sp.correlogram: Spatial correlogram

spdep: Return package version number

sp.mantel.mc: Mantel-Hubert spatial general cross product statistic

spweights.constants: Provides constants for spatial weights matrices

ssw: Compute the sum of dissimilarity

stsls: Generalized spatial two stage least squares

subset.listw: Subset a spatial weights list

subset.nb: Subset a neighbours list

summary.nb: Print and summary function for neighbours and weights lists

summary.sarlm: summary method for class sarlm

testnb: Test a neighbours list for symmetry

tolerance.nb: Function to construct edges based on a tolerance angle and a...

tri2nb: Neighbours list from tri object

trW: Spatial weights matrix powers traces

used.cars: US 1960 used car prices

wheat: Mercer and Hall wheat yield data

write.nb.gal: Write a neighbours list as a GAL lattice file

Files in this package

spdep/ChangeLog
spdep/DESCRIPTION
spdep/NAMESPACE
spdep/R
spdep/R/AAA.R spdep/R/EBI.R spdep/R/LR.spsarlm.R spdep/R/ME.R spdep/R/SpatialFiltering.R spdep/R/airdist.R spdep/R/anova.sarlm.R spdep/R/aple.R spdep/R/aple.mc.R spdep/R/apleplot.R spdep/R/autocov.R spdep/R/bptest.sarlm.R spdep/R/card.R spdep/R/cellneighbours.R spdep/R/choynowski.R spdep/R/components.R spdep/R/cyclical.R spdep/R/diffnb.R spdep/R/dnearneigh.R spdep/R/droplinks.R spdep/R/edit.nb.R spdep/R/eigenw.R spdep/R/error.hessian.R spdep/R/error.spsarlm.R spdep/R/gabrielneigh.R spdep/R/geary.R spdep/R/globalG.R spdep/R/graph2nb.R spdep/R/impacts.R spdep/R/jacobian.R spdep/R/jacobian_setup.R spdep/R/jc.R spdep/R/knearneigh.R spdep/R/knn2nb.R spdep/R/kpgm_new.R spdep/R/lag.hessian.R spdep/R/lag.spsarlm.R spdep/R/lee.R spdep/R/lee.mc.R spdep/R/lee.test.R spdep/R/lee_internal.R spdep/R/lextrB.R spdep/R/lextrW.R spdep/R/listw2Matrix.R spdep/R/listw2sn.R spdep/R/lm.LMtests.R spdep/R/lm.morantest.R spdep/R/localG.R spdep/R/localmoran.R spdep/R/localmoran.exact.R spdep/R/mcmcsamp.R spdep/R/mess.R spdep/R/moran.R spdep/R/moran.exact.R spdep/R/moran.exact.alt.R spdep/R/moran.plot.R spdep/R/mstree.R spdep/R/mtlocalmoran.R spdep/R/mtmoran.R spdep/R/nb2blocknb.R spdep/R/nb2lines.R spdep/R/nb2listw.R spdep/R/nb2mat.R spdep/R/nbcosts.R spdep/R/nbdists.R spdep/R/nblag.R spdep/R/nboperations.R spdep/R/p.adjustSP.R spdep/R/plot.mst.R spdep/R/plot.nb.R spdep/R/plot.skater.R spdep/R/poly2nb.R spdep/R/prunecost.R spdep/R/prunemst.R spdep/R/read.gal.R spdep/R/read.gwt2nb.R spdep/R/relneigh.R spdep/R/rotation.R spdep/R/s2sls.R spdep/R/sacsarlm.R spdep/R/sarlm.R spdep/R/skater.R spdep/R/soi.R spdep/R/sp.correlogram.R spdep/R/sp.mantel.R spdep/R/spBreg.R spdep/R/spChkOption.R spdep/R/spautolm.R spdep/R/subset.nb.R spdep/R/summary.nb.R spdep/R/summary.spsarlm.R spdep/R/tolerance.nb.R spdep/R/tri2nb.R spdep/R/utils.R spdep/R/weights-utils.R
spdep/build
spdep/build/vignette.rds
spdep/data
spdep/data/NY_data.rda
spdep/data/afcon.rda
spdep/data/auckland.rda
spdep/data/baltimore.rda
spdep/data/boston.rda
spdep/data/columbus.rda
spdep/data/datalist
spdep/data/eire.rda
spdep/data/elect80.rda
spdep/data/getisord.rda
spdep/data/hopkins.rda
spdep/data/house.RData
spdep/data/huddersfield.rda
spdep/data/nc.sids.rda
spdep/data/oldcol.rda
spdep/data/used.cars.rda
spdep/data/wheat.rda
spdep/inst
spdep/inst/CHANGES
spdep/inst/CITATION
spdep/inst/ChangeLog
spdep/inst/README
spdep/inst/doc
spdep/inst/doc/CO69.R
spdep/inst/doc/CO69.Rnw
spdep/inst/doc/CO69.pdf
spdep/inst/doc/SpatialFiltering.R
spdep/inst/doc/SpatialFiltering.Rnw
spdep/inst/doc/SpatialFiltering.pdf
spdep/inst/doc/backstore
spdep/inst/doc/backstore/boot_res.RData
spdep/inst/doc/backstore/nyME_res.RData
spdep/inst/doc/nb.R
spdep/inst/doc/nb.Rnw
spdep/inst/doc/nb.pdf
spdep/inst/doc/nb_igraph.Rmd
spdep/inst/doc/nb_igraph.html
spdep/inst/doc/sids.R
spdep/inst/doc/sids.Rnw
spdep/inst/doc/sids.pdf
spdep/inst/etc
spdep/inst/etc/misc
spdep/inst/etc/misc/geary_eire.txt
spdep/inst/etc/misc/nc_xtra.dbf
spdep/inst/etc/misc/nyadjwts.dbf
spdep/inst/etc/misc/nydata.dbf
spdep/inst/etc/misc/raw_grass_borders.RData
spdep/inst/etc/misc/unstand_sn.txt
spdep/inst/etc/shapes
spdep/inst/etc/shapes/NY8_utm18.dbf
spdep/inst/etc/shapes/NY8_utm18.prj
spdep/inst/etc/shapes/NY8_utm18.shp
spdep/inst/etc/shapes/NY8_utm18.shx
spdep/inst/etc/shapes/auckland.dbf
spdep/inst/etc/shapes/auckland.shp
spdep/inst/etc/shapes/auckland.shx
spdep/inst/etc/shapes/bhicv.dbf
spdep/inst/etc/shapes/bhicv.shp
spdep/inst/etc/shapes/bhicv.shx
spdep/inst/etc/shapes/boston_tracts.dbf
spdep/inst/etc/shapes/boston_tracts.prj
spdep/inst/etc/shapes/boston_tracts.shp
spdep/inst/etc/shapes/boston_tracts.shx
spdep/inst/etc/shapes/columbus.dbf
spdep/inst/etc/shapes/columbus.shp
spdep/inst/etc/shapes/columbus.shx
spdep/inst/etc/shapes/eire.dbf
spdep/inst/etc/shapes/eire.shp
spdep/inst/etc/shapes/eire.shx
spdep/inst/etc/shapes/sids.dbf
spdep/inst/etc/shapes/sids.shp
spdep/inst/etc/shapes/sids.shx
spdep/inst/etc/shapes/wheat.dbf
spdep/inst/etc/shapes/wheat.shp
spdep/inst/etc/shapes/wheat.shx
spdep/inst/etc/weights
spdep/inst/etc/weights/NY_nb.gal
spdep/inst/etc/weights/baltk4.GWT
spdep/inst/etc/weights/columbus.gal
spdep/inst/etc/weights/ncCC89.gal
spdep/inst/etc/weights/ncCR85.gal
spdep/inst/etc/weights/us48.txt
spdep/inst/etc/weights/us48_q.GAL
spdep/inst/etc/weights/us48_rk.GAL
spdep/inst/etc/weights/wmat.dat
spdep/man
spdep/man/COL.OLD.Rd spdep/man/EBImoran.mc.Rd spdep/man/EBest.Rd spdep/man/EBlocal.Rd spdep/man/GMerrorsar.Rd spdep/man/LR.sarlm.Rd spdep/man/MCMCsamp.Rd spdep/man/ME.Rd spdep/man/NY_data.Rd spdep/man/SpatialFiltering.Rd spdep/man/afcon.Rd spdep/man/aggregate.nb.Rd spdep/man/airdist.Rd spdep/man/anova.sarlm.Rd spdep/man/aple.Rd spdep/man/aple.mc.Rd spdep/man/aple.plot.Rd spdep/man/as_dgRMatrix_listw.Rd spdep/man/auckland.Rd spdep/man/autocov_dist.Rd spdep/man/baltimore.Rd spdep/man/bhicv.Rd spdep/man/boston.Rd spdep/man/bptest.sarlm.Rd spdep/man/card.Rd spdep/man/cell2nb.Rd spdep/man/choynowski.Rd spdep/man/columbus.Rd spdep/man/compon.Rd spdep/man/diffnb.Rd spdep/man/dnearneigh.Rd spdep/man/do_ldet.Rd spdep/man/droplinks.Rd spdep/man/edit.nb.Rd spdep/man/eigenw.Rd spdep/man/eire.Rd spdep/man/elect80.Rd spdep/man/errorsarlm.Rd spdep/man/geary.Rd spdep/man/geary.mc.Rd spdep/man/geary.test.Rd spdep/man/getisord.Rd spdep/man/globalG.test.Rd spdep/man/graphneigh.Rd spdep/man/gstsls.Rd spdep/man/hopkins.Rd spdep/man/house.Rd spdep/man/huddersfield.Rd spdep/man/impacts.sarlm.Rd spdep/man/include.self.Rd spdep/man/invIrM.Rd spdep/man/joincount.mc.Rd spdep/man/joincount.multi.Rd spdep/man/joincount.test.Rd spdep/man/knearneigh.Rd spdep/man/knn2nb.Rd spdep/man/lag.listw.Rd spdep/man/lagmess.Rd spdep/man/lagsarlm.Rd spdep/man/lee.Rd spdep/man/lee.mc.Rd spdep/man/lee.test.Rd spdep/man/lextrB.Rd spdep/man/listw2sn.Rd spdep/man/lm.LMtests.Rd spdep/man/lm.morantest.Rd spdep/man/lm.morantest.exact.Rd spdep/man/lm.morantest.sad.Rd spdep/man/localG.Rd spdep/man/localmoran.Rd spdep/man/localmoran.exact.Rd spdep/man/localmoran.sad.Rd spdep/man/mat2listw.Rd spdep/man/moran.Rd spdep/man/moran.mc.Rd spdep/man/moran.plot.Rd spdep/man/moran.test.Rd spdep/man/mstree.Rd spdep/man/nb2INLA.Rd spdep/man/nb2WB.Rd spdep/man/nb2blocknb.Rd spdep/man/nb2lines.Rd spdep/man/nb2listw.Rd spdep/man/nb2mat.Rd spdep/man/nbcosts.Rd spdep/man/nbdists.Rd spdep/man/nblag.Rd spdep/man/nboperations.Rd spdep/man/nc.sids.Rd spdep/man/p.adjustSP.Rd spdep/man/plot.mst.Rd spdep/man/plot.nb.Rd spdep/man/plot.skater.Rd spdep/man/poly2nb.Rd spdep/man/predict.sarlm.Rd spdep/man/probmap.Rd spdep/man/prunecost.Rd spdep/man/prunemst.Rd spdep/man/read.gal.Rd spdep/man/read.gwt2nb.Rd spdep/man/residuals.sarlm.Rd spdep/man/rotation.Rd spdep/man/sacsarlm.Rd spdep/man/set.mcOption.Rd spdep/man/set.spChkOption.Rd spdep/man/similar.listw.Rd spdep/man/skater.Rd spdep/man/sp.correlogram.Rd spdep/man/sp.mantel.mc.Rd spdep/man/spautolm.Rd spdep/man/spdep.Rd spdep/man/spweights.constants.Rd spdep/man/ssw.Rd spdep/man/stsls.Rd spdep/man/subset.listw.Rd spdep/man/subset.nb.Rd spdep/man/summary.nb.Rd spdep/man/summary.sarlm.Rd spdep/man/testnb.Rd spdep/man/tolerance.nb.Rd spdep/man/trW.Rd spdep/man/tri2nb.Rd spdep/man/used.cars.Rd spdep/man/wheat.Rd spdep/man/write.nb.gal.Rd
spdep/src
spdep/src/Makevars
spdep/src/card.c
spdep/src/dfs_ncomp.c
spdep/src/dnn.c
spdep/src/eminmaxC.c
spdep/src/gabriel.c
spdep/src/gearyw.c
spdep/src/gsymtest.c
spdep/src/init.c
spdep/src/insiders.c
spdep/src/jc.c
spdep/src/knn.c
spdep/src/lagw.c
spdep/src/listw2Matrix.c
spdep/src/listw2sn.c
spdep/src/ml_sse.c
spdep/src/mom_calc.c
spdep/src/nbdists.c
spdep/src/polypoly.c
spdep/src/relative.c
spdep/src/skater.c
spdep/src/spdep.h
spdep/src/symtest.c
spdep/vignettes
spdep/vignettes/CO69.Rnw
spdep/vignettes/SpatialFiltering.Rnw
spdep/vignettes/nb.Rnw
spdep/vignettes/nb_igraph.Rmd
spdep/vignettes/sids.Rnw

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