plotKinrespDiagnostics.kinresp: plotKinrespDiagnostics kinresp

Description Usage Arguments Details Value Author(s) See Also

Description

Diagnostic plots for confining unlimited growth phase.

Usage

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## S3 method for class 'kinresp'
plotKinrespDiagnostics(kinrespRes, 
    plotFileBasename = "", expText = NULL, 
    xunit = "hour", yunit = "gC CO2 / gC soil / hour", 
    kind = c(resp = "resp", respLog = "respLog", 
        resid = "resid"), residType = "pearson", 
    rangeN = nrow(kinrespRes$dataGrowth) + 
        c(1 - nrow(kinrespRes$stat), 0), 
    ...)

Arguments

kinrespRes

object of class kinresp from kinrespGrowthphaseReplicate to plot diagnostics for.

plotFileBasename

basename of figure files for diagnostic plots

expText
xunit

unit of time to be displayed in the x-axis title

yunit

unit of respiration to be displayed in the y-axis title

kind

kind of diagnostic plot series: character vector of resp, respLog, and resid

resp

Observations and fitted model at original scale.

respLog

Observations and fitted model at logarithmic scale.

resid

Model residuals

residType

type of residuals, see argument type of residuals.lme

rangeN

the range (numeric vector of length two) of the number of records, for which diagnostic plots should be produced.

...

further arguments to array plotting

  • rangeN: nCol integer scalar of number of columns

  • topOffsetLine=0.08: inset of the diagnostics

Details

Writing figure files

If plotFileBasename has been specified, diagnostic plot series are save in emf and pdf format

Value

invisible(NULL)

Author(s)

Thomas Wutzler <thomas.wutzler@web.de>

See Also

kinrespGrowthphaseReplicate ,kinrespGrowthphaseExperiment ,plotKinrespDiagnostics.kinrespList ,twKinresp


twKinresp documentation built on May 2, 2019, 4:47 p.m.