SigFidelity: Experimental Function

In vegsoup: Classes and Methods for Phytosociology

Description

Experimental.

Usage

## S4 method for signature 'VegsoupPartition'
SigFidelity(obj, mode = 1, nperm = 999, alternative = "two.sided", verbose = TRUE)

Arguments

obj	'VegsoupPartition' object.
mode	type of analysis. See ‘Details’.
nperm	number of permutations
alternative	alternative hypthersis.
verbose	more output.

Details

mode = 0 looks for species whose abundance is significantly higher in one of the groups. mode = 1 looks for species whose abundance is significantly higher in sites belonging to one group as opposed to sites not belonging to it.

Value

An object of class 'VegsoupPartitionFidelity'

Author(s)

Adapted from function signassoc() of package indicspecies by Miquel De Cáceres Ainsa.

vegsoup documentation built on Feb. 24, 2021, 3 a.m.