VegsoupPartitionFidelity-class: VegsoupPartitionFidelity Class

In vegsoup: Classes and Methods for Phytosociology

Description

A class extending class VegsoupPartition.

Objects from the Class

Objects can be created by calls to the function fidelity.

Slots

Class slots extending VegsoupPartition

stat:

Object of class matrix containing the fidelity values.

fisher.test:

Object of class matrix containing a Fisher test giving the significance of fidelity values.

lowerCI:

Object of class matrix containing boot strap confidence intervals. All values are NA if no bootstrap was performed by a call to fidelity.

upperCI:

Same as lowerCI

nboot:

Object of class integer giving the number of bootstrap replicates performed. See above.

fidelity.method:

Object of class character giving the name of the method.

Extends

Class VegsoupPartition, directly. Class Vegsoup, by class VegsoupPartition, distance 2.

Methods

These generic methods below apply to objects inheriting VegsoupPartitionFidelity. All other methods defined for classes VegsoupPartition or Vegsoup apply also by direct inheritance (See ‘Extends’).

getStat

Method to return slot(obj, 'stat')

summary

Summary method

Author(s)

Roland Kaiser

See Also

fidelity, VegsoupOptimstride

Examples

require(parallel)

showClass("VegsoupPartitionFidelity")

data(barmstein)

x <- fidelity(VegsoupPartition(barmstein, k = 2),
              method = "IndVal")
x

x <- fidelity(VegsoupPartition(coenoflex(1000, 50), k = 10),
              method = "IndVal", fast = TRUE)
x

vegsoup documentation built on Feb. 24, 2021, 3 a.m.