getBackground: Estimate background intensity from the negative control...
In ARRmNormalization: Adaptive Robust Regression normalization for Illumina methylation data
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/NormalizeARRm.R
Description
This function estimates background intensity for the two colors by taking the median of the negative control probes in each color channel.
Usage
1
getBackground(greenControlMatrix, redControlMatrix)
Arguments
greenControlMatrix
matrix of negative control probes intensities in the green channel. Rows are probes, columns are samples.
redControlMatrix
matrix of the negative control probes intensities in the red channel. Rows are probes, columns are samples.
Value
Returns a data.frame with two columns; "green" contains the background intensity in the green channel for each sample and "red" contains the background intensity in the red channel for each sample
Author(s)
Jean-Philippe Fortin <jfortin@jhsph.edu>
Examples
1
2
3
data(greenControlMatrix)
data(redControlMatrix)
getBackground(greenControlMatrix,redControlMatrix)
ARRmNormalization documentation built on Nov. 8, 2020, 5:25 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/NormalizeARRm.R
Description
This function estimates background intensity for the two colors by taking the median of the negative control probes in each color channel.
Usage
1 | getBackground(greenControlMatrix, redControlMatrix)
|
Arguments
greenControlMatrix |
matrix of negative control probes intensities in the green channel. Rows are probes, columns are samples. |
redControlMatrix |
matrix of the negative control probes intensities in the red channel. Rows are probes, columns are samples. |
Value
Returns a data.frame with two columns; "green" contains the background intensity in the green channel for each sample and "red" contains the background intensity in the red channel for each sample
Author(s)
Jean-Philippe Fortin <jfortin@jhsph.edu>
Examples
1 2 3 | data(greenControlMatrix)
data(redControlMatrix)
getBackground(greenControlMatrix,redControlMatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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