positionPlots: Plots to evalue chip position effects on different...
For each probe type, and for each sample, deviations from the chip mean are computed for a given percentile. These deviations are plotted against on-chip position.
list containing three matrices.
list$II must contain respectively the matrices of percentiles obtained from a
betaMatrix for the Type I Green probes, Type I Red probes and Type II probes. See
designInfo matrix returned by
Vector of percentiles to be plotted. By default, the 25th, 50th and 75th percentiles are plotted. (
Plots are produced and saved as pdf in the current directory.
Jean-Philippe Fortin <email@example.com>
(quantiles, designInfo, percentiles=(25,50,75))