getDesignInfo: Build the chip and position indices
In ARRmNormalization: Adaptive Robust Regression normalization for Illumina methylation data
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/NormalizeARRm.R
Description
If a vector of sample names of the form "6793856729_R03C02" is given, the function builds a data frame containing chip and position indices for the samples. If no samples names are provided by the user but explicit postion and chip vectors are provided, the data frame is built with these explicit indices.
Usage
1
getDesignInfo(sampleNames = NULL, chipVector = NULL, positionVector = NULL)
Arguments
sampleNames
Names of the samples of the form "6793856729_R03C02" (Chip ID, Row, Column)
chipVector
Numeric vector of chip indices (one chip contains 12 samples)
positionVector
Numeric vector of on-chip position indices (between 1 and 12)
Value
A data.frame containing a column named chipInfo containing the chip indices, a column named positionInfo containing the position indices, and a column sampleNames if sample names were provided.
Author(s)
Jean-Philippe Fortin <jfortin@jhsph.edu>
Examples
1
2
data(sampleNames)
getDesignInfo(sampleNames)
ARRmNormalization documentation built on Nov. 8, 2020, 5:25 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/NormalizeARRm.R
Description
If a vector of sample names of the form "6793856729_R03C02" is given, the function builds a data frame containing chip and position indices for the samples. If no samples names are provided by the user but explicit postion and chip vectors are provided, the data frame is built with these explicit indices.
Usage
1 | getDesignInfo(sampleNames = NULL, chipVector = NULL, positionVector = NULL)
|
Arguments
sampleNames |
Names of the samples of the form "6793856729_R03C02" (Chip ID, Row, Column) |
chipVector |
Numeric vector of chip indices (one chip contains 12 samples) |
positionVector |
Numeric vector of on-chip position indices (between 1 and 12) |
Value
A data.frame containing a column named chipInfo containing the chip indices, a column named positionInfo containing the position indices, and a column sampleNames if sample names were provided.
Author(s)
Jean-Philippe Fortin <jfortin@jhsph.edu>
Examples
1 2 | data(sampleNames)
getDesignInfo(sampleNames)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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