It returns the percentiles of a betaMatrix for Type I Green, Type I Red and Type II probes. If no list of probes is provided, all probes are taken into account to compute the percentiles.
1  getQuantiles(betaMatrix,goodProbes=NULL)

betaMatrix 

goodProbes 
Ids of the probes to be normalized (Id. of the form "cg00000029"). 
Returns a list
of three matrices of percentiles. For Type I green and Type I red probes, the corresponding matrices can be accessed by $green
and $red
. For Type II probes, the matrix can be accessed by $II
JeanPhilippe Fortin <jfortin@jhsph.edu>
1 2 3 4 5  data(greenControlMatrix)
data(redControlMatrix)
data(sampleNames)
data(betaMatrix)
quantiles=getQuantiles(betaMatrix)

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