import.data: Importing Affy Cel File

Description Usage Arguments Value Author(s) Examples

View source: R/import.data.R

Description

This function imports cel files and create an 'AffyBatch' based on the imported cel

Usage

1
import.data(phenotype.file, path=getwd(), ...)

Arguments

phenotype.file

the name of the phenotype file - text file

path

the name of the directory storing phenotype.file and the cel files, the default value is the current working directory

...

Refers to "read.AnnotatedDataFrame" (Biobase)

Value

an 'AffyBatch'

Author(s)

Xiwei Wu xwu@coh.org, Xuejun Arthur Li xueli@coh.org

Examples

1
2
3
4
5
6
## Not run: 
datadir <- system.file("extdata", package = "estrogen")
raw <- import.data("phenodata.txt", path=datadir, header=TRUE, sep="", 
    row.names="filename")

## End(Not run)

AffyExpress documentation built on May 31, 2017, 11:11 a.m.

Search within the AffyExpress package
Search all R packages, documentation and source code