import.data: Importing Affy Cel File

In AffyExpress: Affymetrix Quality Assessment and Analysis Tool

Description

This function imports cel files and create an 'AffyBatch' based on the imported cel

Usage

import.data(phenotype.file, path=getwd(), ...)

Arguments

phenotype.file	the name of the phenotype file - text file
path	the name of the directory storing phenotype.file and the cel files, the default value is the current working directory
...	Refers to "read.AnnotatedDataFrame" (Biobase)

Value

an 'AffyBatch'

Author(s)

Xiwei Wu [e-mail], Xuejun Arthur Li [e-mail]

Examples

## Not run: 
datadir <- system.file("extdata", package = "estrogen")
raw <- import.data("phenodata.txt", path=datadir, header=TRUE, sep="", 
    row.names="filename")

## End(Not run)

AffyExpress documentation built on Nov. 8, 2020, 7:50 p.m.