Microarray quality control and assessment

Description

Create quality control report in an HTML file that contains a set of assessment plots, including Affymetrix recommended quality assessment, RNA quality assessment, sample quality assessment, quality diagnostic using PLM (pseudo-chip images and NUSE and RLE plots) in your current working directory.

Usage

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AffyQA(parameters, raw, Output="AffyQA.html") 

Arguments

parameters

a list of variables

raw

an 'AffyBatch'

Output

name of the output file

Value

This function only create an html file

Author(s)

Xiwei Wu xwu@coh.org, Xuejun Arthur Li xueli@coh.org

Examples

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## Not run: 
data(testData)
AffyQA(parameters=c("group", "gender"), testData)

## End(Not run)