AffyQA: Microarray quality control and assessment

In AffyExpress: Affymetrix Quality Assessment and Analysis Tool

Description

Create quality control report in an HTML file that contains a set of assessment plots, including Affymetrix recommended quality assessment, RNA quality assessment, sample quality assessment, quality diagnostic using PLM (pseudo-chip images and NUSE and RLE plots) in your current working directory.

Usage

AffyQA(parameters, raw, Output="AffyQA.html") 

Arguments

parameters	a list of variables
raw	an 'AffyBatch'
Output	name of the output file

Value

This function only create an html file

Author(s)

Xiwei Wu [e-mail], Xuejun Arthur Li [e-mail]

Examples

## Not run: 
data(testData)
AffyQA(parameters=c("group", "gender"), testData)

## End(Not run)

AffyExpress documentation built on Nov. 8, 2020, 7:50 p.m.