Man pages for AgiMicroRna
Processing and Differential Expression Analysis of Agilent microRNA chips
| basicLimma | Linear models Using limma |
| boxplotMicroRna | Boxplot |
| cvArray | Coefficient of variation of replicated probes within array |
| dd.micro | data example (uRNAList) |
| ddPROC | Processed miRNA data (uRNAList) |
| dimnames.uRNAList | Retrieve the Dimension Names of an uRNAList Object |
| dim.uRNAList | Retrieve the Dimensions of an uRNAList Object |
| esetMicroRna | ExpressionSet object from a uRNAList |
| filterMicroRna | Filtering Genes |
| getDecideTests | Differential expression analysis an multiplicity of the tests |
| HeatMapMicroRna | HeatMap |
| hierclusMicroRna | Hierarchical clustering |
| mvaBASIC | MVA plot |
| mvaMicroRna | MA plot |
| PCAplotMicroRna | PCA plot |
| plotDensityMicroRna | Density Plots of Intensity Signals |
| pvalHistogram | Histogram of the p values |
| qcPlots | Plots for Quality Assessment |
| readMicroRnaAFE | Read Agilent Feature Extraction txt data files |
| readTargets | read the target file |
| RleMicroRna | Relative Log Expression |
| rmaMicroRna | Getting the Total Gene Signal by RMA algorithm |
| significantMicroRna | Summarize Differential Expression Results |
| summary.uRNAList | Summaries of Microarray Data Objects |
| targets.micro | Example of target file |
| tgsMicroRna | Getting the Total Gene Signal |
| tgsNormalization | Normalization Between Arrays |
| uRNAList | uRNAList - class |
| writeEset | Writes the expression data matrix of an ExpressionSet object... |
