refAllele: Reference allele
In AllelicImbalance: Investigates Allele Specific Expression
Description
Usage
Arguments
Details
Author(s)
Examples
Description
Extract the allele based on SNP location from the reference fasta file
Usage
1
refAllele(x, fasta)
Arguments
x
ASEset object
fasta
path to fasta file, index should be located in the same folder
Details
The alleles will be placed in the rowRanges() meta column 'ref'
Author(s)
Jesper R. Gadin, Lasse Folkersen
Examples
1
2
3
4
5
#load example data
data(ASEset.sim)
fasta <- system.file('extdata/hg19.chr17.subset.fa', package='AllelicImbalance')
a <- refAllele(ASEset.sim,fasta=fasta)
AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Author(s) Examples
Description
Extract the allele based on SNP location from the reference fasta file
Usage
1 | refAllele(x, fasta)
|
Arguments
x |
|
fasta |
path to fasta file, index should be located in the same folder |
Details
The alleles will be placed in the rowRanges() meta column 'ref'
Author(s)
Jesper R. Gadin, Lasse Folkersen
Examples
1 2 3 4 5 | #load example data
data(ASEset.sim)
fasta <- system.file('extdata/hg19.chr17.subset.fa', package='AllelicImbalance')
a <- refAllele(ASEset.sim,fasta=fasta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.