ABnull: Run model that considers no accumulation of epimutations...
In AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Description
Usage
Arguments
Value
Examples
Description
Run model that considers no accumulation of epimutations (ABnull)
Usage
1
ABnull(pedigree.data, out.dir, out.name)
Arguments
pedigree.data
Generation table name, you can find sample file in
out.dir
outputdirectory
out.name
name of file
Value
ABnull RData file.
Examples
1
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9
#Get some toy data
inFile <- readRDS(system.file("extdata/dm/","output.rds", package="AlphaBeta"))
pedigree <- inFile$Pdata
out.name <- "CG_global_estimates_ABnull"
out <- ABnull(pedigree.data = pedigree,
out.dir=getwd(),
out.name=out.name)
summary(out)
AlphaBeta documentation built on Nov. 8, 2020, 6:30 p.m.
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Description Usage Arguments Value Examples
Description
Run model that considers no accumulation of epimutations (ABnull)
Usage
1 | ABnull(pedigree.data, out.dir, out.name)
|
Arguments
pedigree.data |
Generation table name, you can find sample file in |
out.dir |
outputdirectory |
out.name |
name of file |
Value
ABnull RData file.
Examples
1 2 3 4 5 6 7 8 9 | #Get some toy data
inFile <- readRDS(system.file("extdata/dm/","output.rds", package="AlphaBeta"))
pedigree <- inFile$Pdata
out.name <- "CG_global_estimates_ABnull"
out <- ABnull(pedigree.data = pedigree,
out.dir=getwd(),
out.name=out.name)
summary(out)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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