Files in AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

NEWS
LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/doc/AlphaBeta.Rmd inst/doc/AlphaBeta.R inst/doc/AlphaBeta.pdf
inst/extdata/generations.fn
inst/extdata/tmp_generation.fn
inst/extdata/dm/AB-methprop-CG-0.99.csv
inst/extdata/dm/pedigree.csv
inst/extdata/dm/AB-dMatrix-CG-0.99.csv
inst/extdata/dm/sampleInfo.csv
inst/extdata/dm/branchPoints.csv
inst/extdata/models/Boot_CG_global_estimates_ABneutral.Rdata
inst/extdata/models/CG_global_estimates_ABselectMM.Rdata
inst/extdata/models/CG_global_estimates_ABnull.Rdata
inst/extdata/models/CG_global_estimates_ABselectUU.Rdata
inst/extdata/models/CG_global_estimates_ABneutral.Rdata
inst/extdata/data/G31_109_r1.txt
inst/extdata/data/G3_87_r1.txt
inst/extdata/data/G3_87_r2.txt
inst/extdata/data/G3_26_r1.txt
inst/extdata/soma/AB-methprop-CG-0.99.csv
inst/extdata/soma/pedigreeSoma.csv
inst/extdata/soma/AB-dMatrix-CG-0.99.csv
inst/extdata/soma/sampleInfo.csv
vignettes/AlphaBeta.Rmd
vignettes/AB-dMatrix-CG-0.99.csv
vignettes/AB-methProp-CG-0.99.csv
vignettes/alphabeta.png
R/rcMethlvl.R R/BOOTmodel.R R/D-matrices.R R/checkFun.R R/ABselectUU.R R/FtestRSS.R R/ABselectUUSOMA.R R/convertDMATRIX.R R/ABneutralSOMA.R R/ABnull.R R/ABneutral.R R/time.R R/makePHYLO.R R/ABselectMMSOMA.R R/ABselectMM.R R/dataRead.R man/rc.meth.lvl.Rd man/FtestRSS.Rd man/ABselectMMSOMA.Rd man/ABneutralSOMA.Rd man/makePHYLO.Rd man/BOOTmodel.Rd man/convertDMATRIX.Rd man/ABselectUU.Rd man/ABselectUUSOMA.Rd man/ABselectMM.Rd man/dMatrix.Rd man/ABnull.Rd man/ABneutral.Rd
build/vignette.rds
AlphaBeta documentation built on Oct. 31, 2019, 4:39 a.m.