save_files_to_rDolphin: Save files to rDoplhin

In AlpsNMR: Automated spectraL Processing System for NMR

Description

The function saves the CSV files required by to_rDolphin and Automatic_targeted_profiling functions for metabolite profiling.

Usage

save_files_to_rDolphin(files_rDolphin, output_directory)

Arguments

files_rDolphin	a list containing 4 elements from files_to_rDolphin meta_rDolphin: metadata in rDolphin format, NMR_spectra: spectra matrix ROI: ROI template Parameters_blood: parameters file
output_directory	a directory in which the CSV files are saved

Value

CSV files containing:

See Also

Other import/export functions: Pipelines, files_to_rDolphin(), load_and_save_functions, nmr_data(), nmr_meta_export(), nmr_read_bruker_fid(), nmr_read_samples(), nmr_zip_bruker_samples(), save_profiling_output(), to_ChemoSpec()

Other nmr_dataset_1D functions: [.nmr_dataset_1D(), computes_peak_width_ppm(), file_lister(), files_to_rDolphin(), format.nmr_dataset_1D(), is.nmr_dataset_1D(), load_and_save_functions, new_nmr_dataset_1D(), nmr_align_find_ref(), nmr_baseline_removal(), nmr_baseline_threshold(), nmr_exclude_region(), nmr_integrate_regions(), nmr_interpolate_1D(), nmr_meta_add(), nmr_meta_export(), nmr_meta_get_column(), nmr_meta_get(), nmr_normalize(), nmr_pca_build_model(), nmr_pca_outliers_filter(), nmr_pca_outliers_plot(), nmr_pca_outliers_robust(), nmr_pca_outliers(), nmr_ppm_resolution(), plot.nmr_dataset_1D(), plot_webgl(), print.nmr_dataset_1D(), rdCV_PLS_RF_ML(), rdCV_PLS_RF(), to_ChemoSpec(), validate_nmr_dataset_peak_table(), validate_nmr_dataset()

Other to_rDolphin_blood functions: save_profiling_output()

Examples

## Not run: 
dataset <- system.file("dataset-demo", package = "AlpsNMR")
excel_file <- system.file("dataset-demo", "dummy_metadata.xlsx", package = "AlpsNMR")
nmr_dataset <- nmr_read_samples_dir(dataset)
files_rDolphin = files_to_rDolphin_blood(nmr_dataset)
output_directory = "."
save_files_to_rDolphin(files_rDolphin, output_directory)

## End(Not run)

AlpsNMR documentation built on April 1, 2021, 6:02 p.m.